Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30451
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 31 1.0
SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9) 29 3.1
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 27 9.4
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 9.4
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 105 bits (251), Expect = 4e-23
Identities = 48/90 (53%), Positives = 68/90 (75%)
Frame = -1
Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 347
+ + KLYR+L+RRTNAKFNQIV++RL MSR RPP+S++RL R MK + I VVVG
Sbjct: 132 IRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLARLVRKMKASGHKDKICVVVG 191
Query: 346 TVTNDVRLYKIPKMTVAALHVTEKARARIL 257
++T+D R++++P + + AL +E ARARIL
Sbjct: 192 SITDDKRIFEVPALKICALRFSETARARIL 221
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/66 (60%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
Frame = -3
Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTK-----PYVRTK 90
AGGEILTFDQLALRAP G+ TVL+QG R AREA RH G APG P S T Y+ T
Sbjct: 223 AGGEILTFDQLALRAPLGQNTVLLQGPRKAREAERHMGLAPGVPHSDTNWCGDLDYIGTD 282
Query: 89 GHEKAR 72
G + R
Sbjct: 283 GDAQCR 288
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2
Query: 594 GIDINHKHDRKVRRTEVKSQDIYLRLLV 511
GIDI KH +K R E SQ++Y+RLLV
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLV 136
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 222 QLIKSKNFSSSAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 377
QL + S K +T R T++FGIL L + TT IKP R
Sbjct: 596 QLTSTSRLKSLYKDHCWDMLITLRPITILFGILALLLNLFVFVTTVGIKPLR 647
>SB_2504| Best HMM Match : Profilin (HMM E-Value=2.9)
Length = 191
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = -1
Query: 520 VTCKLYRYLARRT--NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 347
V C+ Y+ L N + NQI +RLF IN PP ++ +A T L + G
Sbjct: 76 VQCQTYKELRNSVIQNLQRNQITQKRLFNLLIN-PPTQLAGIAASENNKTVRHLGRHLTG 134
Query: 346 TVTNDVRLYKIPKMTVAAL--HVTEKARARILALE 248
ND L TV L H+T A+ L+ E
Sbjct: 135 HAKNDA-LSSENNKTVRHLGRHLTGHAKNDALSSE 168
>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 271 RARILALEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAP 92
+A + A + K + + V+R R+ W K +++V CV LA++ L + +F
Sbjct: 15 QAWLTATQSKSPIQSRLIRVIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCR 74
Query: 91 R 89
R
Sbjct: 75 R 75
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 248 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 117
GE+++ D++ +A + Q N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 271 RARILALEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAP 92
+A + A + K + + V+R R+ W K +++V CV LA++ L + +F
Sbjct: 15 QAWLTATQSKSPIQSRLIRVIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCR 74
Query: 91 R 89
R
Sbjct: 75 R 75
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 48 LDISTTTGPCFFMSLGANIGFSVRARCSWSRAKVTHCLTSI 170
L IS +TG + MSL + FSV+ +W R + H +
Sbjct: 547 LYISDSTGLSYSMSLERVLYFSVKTGSTWLRHYIDHSFVDL 587
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 350 HYHGNQTLTSWLLHVARQTRHRDWW 424
HYH N+ L +L ++R WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 129 SWSRAKVTHCLTSISLTLYQY 191
+W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,824,903
Number of Sequences: 59808
Number of extensions: 458177
Number of successful extensions: 1134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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