Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30451
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   108   4e-24
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    31   0.89 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    31   0.89 
Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  108 bits (259), Expect = 4e-24
 Identities = 55/99 (55%), Positives = 71/99 (71%)
 Frame = -1

Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 347
           L +  KLY +LARRT  KFN IVL+RL MSR NR P+S+++LAR ++K   E    V + 
Sbjct: 25  LRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLS 84

Query: 346 TVTNDVRLYKIPKMTVAALHVTEKARARILALEEKFLLL 230
           TVT+D RLY +PK++VAALHVTE ARARILA   + + L
Sbjct: 85  TVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITL 123



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 46/69 (66%), Positives = 56/69 (81%), Gaps = 2/69 (2%)
 Frame = -3

Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 81
           AGGEI+T DQLAL++P G+ TV +QG R+AREA +HFGPAPG P SHTKPYVR+KG   E
Sbjct: 116 AGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFE 175

Query: 80  KARPSRRAN 54
           +AR  RRA+
Sbjct: 176 RAR-GRRAS 183



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -2

Query: 594 GIDINHKHDRKVRRTEVKSQDIYLRLL 514
           GIDINHKHDR  RRT  KS++ YLRLL
Sbjct: 2   GIDINHKHDRVARRTAPKSENPYLRLL 28


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 473 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 306
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 473 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 306
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ DS + R     T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256


>Z77655-4|CAB01135.1|  378|Caenorhabditis elegans Hypothetical
           protein C56A3.5 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 367 LIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILALEEKFLLLISWLF 215
           L+ V+     N+   +   K+   +LH+T+     +L L +KF LL ++ F
Sbjct: 78  LVKVIEKNYNNEQISHFFEKVKALSLHMTDITSESLLKLMDKFTLLAAFSF 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,866
Number of Sequences: 27780
Number of extensions: 344166
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)