Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30451
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi...   106   1e-23
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ...   100   9e-22
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)            89   2e-18
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom...    31   0.47 
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    29   1.9  
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof...    29   1.9  
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof...    29   2.5  
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof...    29   2.5  
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof...    29   2.5  
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b...    28   4.4  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    28   4.4  
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    28   5.8  

>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
           to GB:P42791
          Length = 187

 Score =  106 bits (254), Expect = 1e-23
 Identities = 50/89 (56%), Positives = 71/89 (79%)
 Frame = -1

Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 347
           L++T KLYR+L RRTN+KFN ++L+RLFMS++N+ P+S+SRL   M    +E  IAV+VG
Sbjct: 26  LKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM--TGKEDKIAVLVG 83

Query: 346 TVTNDVRLYKIPKMTVAALHVTEKARARI 260
           T+T+D+R+++IP M V AL  TE+ARARI
Sbjct: 84  TITDDLRVHEIPAMKVTALRFTERARARI 112



 Score =  102 bits (244), Expect = 2e-22
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
 Frame = -3

Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 81
           AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P SH+KPYVR KG   E
Sbjct: 115 AGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFE 174

Query: 80  KARPSRRA 57
           KAR  R++
Sbjct: 175 KARGKRKS 182


>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
           ribosomal protein L18, Arabidopsis thaliana,
           SWISSPROT:RL18_ARATH
          Length = 187

 Score =  100 bits (239), Expect = 9e-22
 Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
 Frame = -3

Query: 254 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--E 81
           AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HFGPAPG P S+TKPYVR KG   E
Sbjct: 115 AGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFE 174

Query: 80  KARPSRRA 57
           KAR  R++
Sbjct: 175 KARGKRKS 182



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 46/89 (51%), Positives = 69/89 (77%)
 Frame = -1

Query: 526 LEVTCKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 347
           L++  KLYR+L RR+N+ FN ++L+RLFMS++N+ P+S+SRL   M    ++  IAV+VG
Sbjct: 26  LKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM--TGKDDKIAVLVG 83

Query: 346 TVTNDVRLYKIPKMTVAALHVTEKARARI 260
           T+T+D+R+++IP M V AL  TE+ARARI
Sbjct: 84  TITDDLRVHEIPAMKVTALRFTERARARI 112



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 594 GID-INHKHDRKVRRTEVKSQDIYLRLLV 511
           GID I     +K +RT  KS D+YL+LLV
Sbjct: 2   GIDLIAGGKSKKTKRTAPKSDDVYLKLLV 30


>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
          Length = 135

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
 Frame = -3

Query: 254 AGGEILTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH-- 84
           AGGE LTFDQLAL  PT  + TVL++G +N REAV+HFGPAPG P SHTKPYVR  G   
Sbjct: 62  AGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKI 121

Query: 83  EKARPSRRA 57
           E AR  RR+
Sbjct: 122 EIARGRRRS 130



 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 34/61 (55%), Positives = 47/61 (77%)
 Frame = -1

Query: 442 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 263
           MS++N+ P+S+SRL R+M    ++G IAV+VGTVT+DVR+  +P +TV AL  TE ARAR
Sbjct: 1   MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58

Query: 262 I 260
           I
Sbjct: 59  I 59


>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
           homeodomain transcription factor (AGL30) GI:3461830 from
           [Arabidopsis thaliana]; contains Pfam domain PF00319:
           SRF-type transcription factor (DNA-binding and
           dimerisation domain);  PMID: 12837945
          Length = 389

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 140 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 232
           G S  LPH      +PV SSC  E  +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 245 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 153
           E L FD L L+ P+GK   LV G  + +  V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320


>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 564

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 315 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 452
           +LY LTS + VPT T  + S +  F  RA  D       I  ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392


>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 662

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 315 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 410
           +LY LTS + VPT T  + S +  F  RA  D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408


>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 301

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 312 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 410
           G+LY LTS + V T T  K S V  F  RA  D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133


>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 705

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 315 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 410
           +LY LTS + VPT T  + S +  F  RA  D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471


>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1221

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 233 FDQLALRAPTGKKTVLVQGQRNAREAV 153
           FD L LR P+GK   LV G  + +  V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1225

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 233 FDQLALRAPTGKKTVLVQGQRNAREAV 153
           FD L LR P+GK   LV G  + +  V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 469 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 362
           +Q V    + S INRPP+    +  H     R+GL+
Sbjct: 34  SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,042
Number of Sequences: 28952
Number of extensions: 319175
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)