Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30450
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   1.4  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    27   3.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   4.4  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   4.4  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   7.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.7  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 48  PPLNTELADSESSIAESVIQPSIEKSV 128
           PP N  L+DS SSIA     PS+++SV
Sbjct: 145 PPQNQFLSDSRSSIATLNAIPSLDQSV 171


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 543 FVTVSVFLAEGGLRGVAVFAADLGVRTSV 457
           FV +S  L  GGL+ + +    LG+R  V
Sbjct: 110 FVVISFMLFSGGLQAMLILTIKLGIRRHV 138


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   ASVPAKPLEAIEISPPLNTELADSES 83
           AS+ + PL+  + SPPL+T L  S S
Sbjct: 176 ASLTSSPLKDFQSSPPLSTVLQKSHS 201


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 75  SESSIAESVIQPSIEKSVPAPDVVPEER-----GELVTDIDIGIPERRAQEICVPVTNEI 239
           + +S  +  I P +E+SVP  +   EE+      + VT  DI +   RA  I  P TN +
Sbjct: 429 ARASELQYAIIPELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATGI--PTTNLM 486

Query: 240 RPE 248
           R E
Sbjct: 487 RGE 489


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 665 MSGASWMEASVLVERRSLWGQSSW 594
           +S A+W +  ++VE  SLW  ++W
Sbjct: 548 VSKAAWHKHWIVVENGSLWEYANW 571


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 87  LNFRNLPTLYSTV 49
           LN RNLPT+Y+TV
Sbjct: 278 LNERNLPTIYTTV 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,608
Number of Sequences: 5004
Number of extensions: 31453
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)