Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30450
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51208| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               29   4.6  
SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)                   28   6.1  
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   28   8.1  

>SB_51208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = +3

Query: 12  VPAKPLEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEERGELVTDIDIGI 191
           +P     ++E+SP  + +   SE S  ES  Q   + SVPAP  VPE++   +TD     
Sbjct: 57  IPYLTENSLELSPEEDGQ-PSSEESWDES--QKEDDGSVPAPPHVPEDKVPSLTDKTFQ- 112

Query: 192 PERRAQEICV 221
           PER   ++ V
Sbjct: 113 PERDLHDLLV 122


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 27  LEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEERGELVTDIDIGIPER 200
           LE   +SP  +      + S+ E V+   ++K +   DV+ +E  + + D  IG  ER
Sbjct: 736 LETRPVSPGQSFGNMKRQQSVTEDVVSQLMDKQIEVNDVI-DEGNKFLDDTSIGDDER 792


>SB_39917| Best HMM Match : APH (HMM E-Value=0.00074)
          Length = 407

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 15  PAKPLE-AIEISPPLNTELADSESSIAESVIQPSI-EKSVPAPDVVPEERGELVTDIDIG 188
           P KP E  ++I   L++E  + E   AE+ +   + ++  P P+++P   G+L+  I + 
Sbjct: 102 PNKPQEFVLKIHNSLDSE--NEEVRDAENQLMRMLRDRGFPCPEIIPTRNGQLMEKIHLP 159

Query: 189 IPERRAQEICV 221
             + +  + CV
Sbjct: 160 ASDGQNADGCV 170


>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 78  ESSIAESVIQPSIEKSVPAPDVVPEE 155
           E SI++  IQP+IE+S+P   V+PE+
Sbjct: 700 EDSISQKYIQPNIERSLP-DIVLPED 724


>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 236  FVCDRYANLLSAPFWNPDVDVRNEFSTFFGHYVGCRYRFF 117
            F C  YA  + + ++N   D   ++    GH++G +  FF
Sbjct: 1184 FFCSGYAPFMGSDWYNELRDPTYQYKLDIGHFMGLKVFFF 1223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,934
Number of Sequences: 59808
Number of extensions: 256316
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)