Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30450
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15650.1 68417.m02385 protein kinase-related contains weak si...    30   1.2  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    29   3.8  
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to...    29   3.8  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    28   6.6  
At2g40400.2 68415.m04982 expressed protein similar to GI:7572912...    28   6.6  
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912...    28   6.6  
At5g58800.1 68418.m07367 quinone reductase family protein simila...    27   8.8  

>At4g15650.1 68417.m02385 protein kinase-related contains weak
           similarity to protein kinase [Dictyostelium discoideum]
           gi|551446|emb|CAA86053
          Length = 258

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
 Frame = +3

Query: 6   ASVPAKPLEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEER-------GE 164
           AS P  P+ A+E   P N    ++ + + ESV     +K     D V EE+       G+
Sbjct: 100 ASFP--PVTAVEAIVPENIVTEETVNDVNESVSPVEEQKEKIDIDTVVEEKSVEDEKDGD 157

Query: 165 LVTDIDIGIPERRAQEICVPVTNEIRPEE 251
           + T+I     E    E+  PVT E+  +E
Sbjct: 158 VDTEIASSEVEEPIPEVHTPVTTELEAQE 186


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +3

Query: 33  AIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEERGELVTDIDIGIPERRA-- 206
           ++E +P   TE+  +E  ++ES+        V  P  + E RG+ + D  +  PE     
Sbjct: 417 SVETAPVTTTEIRRAEM-VSESISVEDQTCKVEPPHNLTENRGQTMPDSLVSDPETATVA 475

Query: 207 --QEICVPVTNEIRPE 248
             + + +P TN  R +
Sbjct: 476 AKENLSLPATNGFRKQ 491


>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
           At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
           At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
           At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
           At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1139

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 24  PLEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEERGE--LVTDIDIGIPE 197
           P EA + S   +TE   SES   E   +PS   +   PD   E  GE  LVT +++ IPE
Sbjct: 723 PSEARDASA--STEANGSES---EETYEPSDGDTAHVPDTSVEAAGESKLVTVMEVEIPE 777

Query: 198 RRAQEI 215
           +   ++
Sbjct: 778 KTHSDV 783


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 138 DVVPEERGELVTDIDIGIPERRAQEICVPVTNEI 239
           DV+P+    L+T +   +P R  QE+C  +  E+
Sbjct: 124 DVLPQAYISLLTQLQDSLPPRPLQEVCRTIEREL 157


>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 6   ASVPAKPLEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEE 155
           A + A PL A   S  L+   A S  + AESV  P +  + P P V  EE
Sbjct: 69  AILVAPPLLAAAASLFLSISSAASAETSAESVALPPVATAPPPPPVEKEE 118


>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
           (At3g56140)[Arabidopsis thaliana]
          Length = 735

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 6   ASVPAKPLEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEE 155
           A + A PL A   S  L+   A S  + AESV  P +  + P P V  EE
Sbjct: 69  AILVAPPLLAAAASLFLSISSAASAETSAESVALPPVATAPPPPPVEKEE 118


>At5g58800.1 68418.m07367 quinone reductase family protein similar
           to 1,4-benzoquinone reductase [Phanerochaete
           chrysosporium][GI:4454993]; similar to Trp repressor
           binding protein [Escherichia coli][SP|P30849]; contains
           flavodoxin domain PF00258
          Length = 207

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 27  LEAIEISPPLNTELADSESSIAESVIQPSIEKSVPAPDVVPEERGELVTDID---IGIPE 197
           L  +   P +   L     ++ E +++    K+VP PD VP+ R E + + D    G P 
Sbjct: 25  LRGVNSVPDVEATLWQVPETLPEKILEKV--KAVPRPDDVPDIRPEQLAEADGFMFGFPS 82

Query: 198 R 200
           R
Sbjct: 83  R 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,400
Number of Sequences: 28952
Number of extensions: 169685
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)