Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30449
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 81 4e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 2.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 2.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 3.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 3.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 23 6.5
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 23 6.5
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 23 8.5
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 23 8.5
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 23 8.5
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 23 8.5
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 80.6 bits (190), Expect = 4e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +2
Query: 14 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 181
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S D KF RNQ+F +G ++ +Q
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 2.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 14 MAKSKNHTNHNQNRKAHRNGIKKPRK 91
+AK + NHN ++ A + I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 45 TKTAKLTEMVSKSQGRPGTN 104
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 3.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 32 HTNHNQNRKAHRNGIKKPRKTRHES 106
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 3.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 149 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 63
K SL +LD + AW+SL Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.4 bits (48), Expect = 6.5
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 18 QSQRIIQIITKTAKLTEM--VSKSQGRPGTNPPLAWIQ-NF*GIKGFARRVT*SQPSNSR 188
Q++ II ++ +A L+E+ +S+S G+ +I N I+ F+ +T P NS+
Sbjct: 797 QAESIISSLSSSA-LSELSYISESSMNIGSRLDERFIDANGVAIRDFSAELTYLTPENSK 855
Query: 189 GRL 197
G+L
Sbjct: 856 GKL 858
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 203 FSQPPSRVAWLASGY 159
FSQPP R A SGY
Sbjct: 138 FSQPPFRFALFFSGY 152
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 68 NGIKKPRKTRHESTLGM 118
NGIK+ KTRH S + +
Sbjct: 38 NGIKRGLKTRHVSMMAL 54
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 45 TKTAKLTEMVSKSQGRPGTNPPLAWIQN 128
TK KLT K++ R LAW+Q+
Sbjct: 1014 TKKKKLTRNEIKAKERRARERELAWLQS 1041
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 23.0 bits (47), Expect = 8.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 26 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 169
K H+ + ++K+++NG KK RK +S LR R N+K
Sbjct: 178 KTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +2
Query: 29 NHTNHNQNRKAHRNGIKKPRKTRHESTLGM 118
+H NH+++RK + + +T H L +
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAV 879
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,907
Number of Sequences: 5004
Number of extensions: 18296
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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