Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30449
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    75   6e-15
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    57   2e-09
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    44   1e-05
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    27   1.6  
Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   2.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   2.2  
U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z49127-6|CAA88947.1|  454|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z48055-7|CAO78722.1|  452|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    25   8.7  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +2

Query: 14  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 163
           MAKSKNHTNHNQN+KAHRNGI KP+K    S  G+D KF++N RF +K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKKHIFLSMKGVDAKFIKNLRFSRKNN 50


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = +2

Query: 20  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGN 163
           K +NHTNHN+N KAHRNGI KP+K    S  G   +F+++ RF +K N
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNN 61


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +2

Query: 20  KSKNHTNHNQNRKAHRNGIKKPR 88
           KSKNHTNHNQN  AHR GI KP+
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPK 102


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 2   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHES--TLGMDPKFLRNQR 145
           K+ K A + NH N ++N     NG + P+KTR  S  T    PK  R+ R
Sbjct: 376 KKSKKAAAANHKNASRN-----NGNETPKKTRRSSSTTPTRTPKQRRSSR 420


>Z50029-8|CAA90342.2|  668|Caenorhabditis elegans Hypothetical
           protein ZC504.3 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 53  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCK 154
           +K HR+ +KK R+ RH   +   P +    R C+
Sbjct: 266 QKLHRDAMKKRREQRHREAVSKLPVYYPGLRGCQ 299


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 74   YHFCELCGFGYDLYDSL 24
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 74   YHFCELCGFGYDLYDSL 24
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>U23183-3|AAA64340.3|  496|Caenorhabditis elegans Hypothetical
           protein K01A12.3 protein.
          Length = 496

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +2

Query: 2   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRN 139
           KR      + H  HN +++++  G+K  R +        D  F+RN
Sbjct: 363 KRRSSHPFRMHGRHNVSKRSNAAGMKSTRISARSGRTNRDGNFVRN 408


>Z49127-6|CAA88947.1|  454|Caenorhabditis elegans Hypothetical
           protein F13D12.6 protein.
          Length = 454

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 78  KSQGRPGTNPPLAWIQNF*GIKGFARRVT*SQPSN 182
           +SQ  P T+P L W+    G  G +  +T   P N
Sbjct: 58  ESQSNPSTDPVLLWLTGGPGCSGLSALLTEWGPWN 92


>Z48055-7|CAO78722.1|  452|Caenorhabditis elegans Hypothetical
           protein T07A5.7 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 2   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 100
           +R K A  KN  N+N N+K+    +K+  +  H
Sbjct: 207 QRRKEANKKNSKNYNFNKKSKEAKLKEDLEKNH 239


>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 206  LFSQPPSRVAWLASGYP 156
            ++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 206  LFSQPPSRVAWLASGYP 156
            ++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 206  LFSQPPSRVAWLASGYP 156
            ++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 206  LFSQPPSRVAWLASGYP 156
            ++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425


>U41994-7|AAY55868.1|  155|Caenorhabditis elegans Hypothetical
           protein F59A6.10 protein.
          Length = 155

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 194 PPSRVAWLASGYPSCKTF 141
           PPS+   L +G PSCK F
Sbjct: 117 PPSQKCELENGKPSCKKF 134


>U41110-5|AAA82420.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK682.7 protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   KRIKMAKSKNH-TNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAK 178
           KR  ++KS+   T+    R    +G++ P   R   T  + PK L N+ +       P+K
Sbjct: 44  KRKALSKSQRELTDFVNGRNGDPHGLRLPLPIRSSLTDLVKPKLLENRNYQPPRRKTPSK 103


>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 128 FLRNQRFCKKGNLK 169
           FLRN R+ K GNLK
Sbjct: 353 FLRNARYSKHGNLK 366


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
            precursor protein.
          Length = 5198

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 206  LFSQPPSRVAWLASGYP 156
            ++++PP+++ WL +G P
Sbjct: 2409 VYARPPAKITWLKAGKP 2425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,676,565
Number of Sequences: 27780
Number of extensions: 101494
Number of successful extensions: 358
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)