Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30449
         (286 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    89   4e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    89   6e-19
At1g04030.1 68414.m00390 expressed protein                             32   0.054
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.071
At4g37950.1 68417.m05365 expressed protein                             28   1.2  
At3g48200.1 68416.m05259 expressed protein                             28   1.2  
At5g56560.1 68418.m07058 F-box family protein contains F-box dom...    27   2.7  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    26   3.5  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    26   3.5  
At3g25950.1 68416.m03234 hypothetical protein                          26   4.6  
At5g35550.1 68418.m04229 myb family transcription factor (MYB123...    25   6.1  
At4g35940.1 68417.m05113 expressed protein                             25   6.1  
At3g17010.1 68416.m02172 transcriptional factor B3 family protei...    25   6.1  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    25   6.1  
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    25   6.1  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    25   6.1  
At5g47225.1 68418.m05823 hypothetical protein                          25   8.1  
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)...    25   8.1  
At1g14560.1 68414.m01731 mitochondrial substrate carrier family ...    25   8.1  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 38/53 (71%), Positives = 45/53 (84%)
 Frame = +2

Query: 11  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 169
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = +2

Query: 14  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 169
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T GMDPKFLRNQR+ +K N+K
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At1g04030.1 68414.m00390 expressed protein
          Length = 418

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 11  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 127
           K AKSK  T   Q++K + N I    + R  S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 26  KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 115
           KNHT H++ R ++  G K  RKT   +T G
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 6   ASKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 164
           A  WQ++ +  Q  T+  K+  M + +  RPGT    AW+  F G   + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 2   KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 172
           ++I +A S     H+   K H N I     T  ES  G+    +  + F +  NLKP
Sbjct: 546 EQIMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602


>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 607

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 161 YPSCKTFDSLKILDPCQGWIRAWSSL 84
           YP+C  F SLK L+ C    R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 74  YHFCELCGFGYDLYDSLTLP 15
           YH CE CGF  DLY ++  P
Sbjct: 65  YH-CETCGFDVDLYCAMYPP 83


>At1g62720.1 68414.m07079 pentatricopeptide (PPR)
          repeat-containing protein contains multiple PPR repeats
          Pfam Profile: PF01535
          Length = 426

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 74 YHFCELCGFGYDLY 33
          +H  E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 115 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 26
           A  G VP   WL   + + FA+LV I  +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234


>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 258

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 26  KNHTNHNQNRKAHRNGIKKPRKTRHES 106
           KNH N N  ++  +   K+P++ +H +
Sbjct: 107 KNHWNSNLRKRLPKTQTKQPKRIKHST 133


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 153 RRVT*SQPSNSRGRLREKLPEKQRP 227
           +R+   QP N R   +EK  EKQ+P
Sbjct: 230 KRIEKQQPLNGRHNNKEKQKEKQQP 254


>At3g17010.1 68416.m02172 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 302

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 20  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKF 130
           K K   + +  +K  RN +KK  K++ +  L   P+F
Sbjct: 166 KKKTEDSKSSKKKMTRNKVKKKSKSKSKQVLDGVPEF 202


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 74  YHFCELCGFGYDLYDSLTLP 15
           ++ C +CGF  DL  +LTLP
Sbjct: 182 FYRCLICGFCLDLSCALTLP 201


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 127
           K+ +N  +NR   R      +   HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 127
           K+ +N  +NR   R      +   HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784


>At5g47225.1 68418.m05823 hypothetical protein
          Length = 351

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 206 LFSQPPSRVAWLASGYPS 153
           +F  PP+R  W  SG PS
Sbjct: 87  IFECPPARQVWALSGIPS 104


>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
           identical to telomerase reverse transcriptase
           [Arabidopsis thaliana] GI:5880683
          Length = 1123

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 197 QPPSRVAWLASGYPSCKTFDSLKI 126
           QPP++  WL+S    C   DS  I
Sbjct: 201 QPPTKRQWLSSAVDDCPKDDSATI 224


>At1g14560.1 68414.m01731 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 331

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 146 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 24
           TFD L  +   QGW + ++ L+  Y         G+ +Y+S+
Sbjct: 275 TFDGLNTIVRTQGWKQLFAGLSINYIKIVPSVAIGFTVYESM 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,499,000
Number of Sequences: 28952
Number of extensions: 99201
Number of successful extensions: 319
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)