Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30448
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    30   0.45 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    29   1.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.6  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   5.6  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   7.4  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   9.7  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    25   9.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    25   9.7  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 317 LTNLMKKMLSYGQYNMDKYTYV 382
           LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = -2

Query: 517  RGSELFASIFREH--VLENGEDVANSFHDHP-EDRIAETGSVHVQGSRHVGVLVHVVLAI 347
            RG  +F   F ++   LEN  D   S  D   E  I E  S+     + VG ++  + ++
Sbjct: 1028 RGFGIFEKKFTDYHKFLENISDKLKSEEDTSLETPIHENQSIQSDQIKEVGEVLSAIKSL 1087

Query: 346  AQHFLHQVGQVDNFSIVANNF*ATEDQTGEVSMSSDFFRLI 224
            +   +    Q+D+ +       +++D+   +   +DF +L+
Sbjct: 1088 SDSVMLLKNQIDDLAKEKLPLSSSDDEKVNIKEKTDFMKLL 1128


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 523 KVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFM 648
           K +KI   +L  F  EYD+D S+ +     +  N   D  F+
Sbjct: 367 KAQKINIGQLNRFFSEYDLDASDFLSSSVHKNNNSYLDQYFL 408


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 629 HPI*PLWPACAASITIRSR-CRLMSCPTKLSMLWSASSWVQVRLHGRLMSVNDKR 790
           H +  L   C +S   R+R C  +SCP +L         VQ  L G   S+ DK+
Sbjct: 368 HGVFTLLTECYSSTCSRNRLCYSISCPRRLEQQARLHLKVQPVLSGGSTSITDKQ 422


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 487 REHVLENGEDVANSFHDHPEDR 422
           ++H++EN   +A+ FH+  E +
Sbjct: 26  KDHIVENSSPIASKFHEFDEQK 47


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 415 PRSCLLDDHETSLQHLHRFQEHAPEIYSRTVRFPGVKVEKITTD 546
           P+  +L  HE S++HL R  E A +     V    + V    TD
Sbjct: 133 PKEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTD 176


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 739 LGPSTTAWQAHERQRQTLDMFELD 810
           LGP    WQ HE   +T D+  LD
Sbjct: 39  LGPQFAEWQNHELHPKTRDVSTLD 62


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 801 EHVERLSLTLMSLPCSRTWTQEDADHSIDSFVGHD 697
           E VE +SLT   +  S     ED   S DS +GHD
Sbjct: 135 EMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHD 169


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 562 VDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRLNHHP 678
           +  YD + S A  L+A +M N T+D      ++R  + P
Sbjct: 184 IQSYDDEQSFAFLLEAVKMDNSTADEAVRELVQRAVNSP 222


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +1

Query: 514 PGVKVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRLNHHPFQVSI 693
           P V ++   TDE+ +F+     D+ NA+ +D  +     + +  +  +  L+  P++  +
Sbjct: 85  PSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVVILSSSPYENIL 144

Query: 694 DVMS 705
             +S
Sbjct: 145 SALS 148


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 676 PFQVSIDVMSDKTVDAVVRIFLGPST--TAWQAHERQRQTLDMFEL 807
           P +V  D++++  +  VV   +G S     W ++E++RQ  D F++
Sbjct: 94  PQRVYKDLVNEAGLSKVVTRVIGLSKLKAKWNSYEQKRQLRDQFDI 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,613
Number of Sequences: 5004
Number of extensions: 65404
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)