Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30448
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355... 35 0.089
01_01_0674 + 5162291-5162376,5162530-5162560,5162689-5163207,516... 31 1.4
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 30 1.9
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 30 1.9
11_04_0390 - 17108441-17108654,17108821-17108991,17109074-171091... 30 2.5
03_01_0344 + 2704860-2705156,2705249-2705494 29 3.3
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 29 4.4
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 29 4.4
03_06_0350 - 33306753-33307060,33307133-33307193,33307283-333074... 29 4.4
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 4.4
10_01_0105 + 1287423-1289924 29 5.8
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 28 7.7
>03_01_0463 +
3551764-3551897,3551989-3552046,3552148-3552255,
3552664-3552721,3552788-3553014,3553085-3553145,
3553311-3553615
Length = 316
Score = 34.7 bits (76), Expect = 0.089
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 698 SCPTKLSMLWSASSWVQVRLH---GRLMS--VNDKRSTCSSWTA 814
SCP WSA+ W+ VR + GR S D+ + CSSW A
Sbjct: 243 SCPVIQGEKWSATKWIHVRSYDENGRRSSDKCEDQHALCSSWAA 286
>01_01_0674 +
5162291-5162376,5162530-5162560,5162689-5163207,
5165561-5166010,5166050-5166134,5167374-5167399
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 662 ASITIRSRCRLMSCPTKLSMLWSASSWVQVRLHGRLMSVNDKRSTCSS 805
ASI IR+R + S +KLS L + ++ RL R + NDK T ++
Sbjct: 216 ASILIRAREHIKSLESKLSELEEKNRELEARLASRPAAKNDKGETAAA 263
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 401 TCPRKSARRCTCPCCIGH 348
TCPR +AR C+ PC GH
Sbjct: 47 TCPRCNARYCSLPCYKGH 64
>01_03_0075 - 12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 544 DELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDA 723
DE V+ Y DI ++ + E+ N D + R R L + I ++ T+D
Sbjct: 845 DEAQRKVENYFFDIRKQLF-EYDEVLNSQRDRVYAERRRALASDSLESLIVEYAELTIDD 903
Query: 724 VVRIFLGPST 753
++ +GP T
Sbjct: 904 ILEANIGPDT 913
>11_04_0390 -
17108441-17108654,17108821-17108991,17109074-17109115,
17109364-17109905,17109987-17110448,17110527-17111260,
17111349-17111478
Length = 764
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 647 WPACAASITIRSRCRLMSCPTKLSMLWSASSWVQVRLHGRLMSVND 784
W +R RCR+ T L +S W++ R HG + D
Sbjct: 609 WRRSQKGARLRRRCRIRKLDTGLLKCYSLLCWIESRRHGNQVGFLD 654
>03_01_0344 + 2704860-2705156,2705249-2705494
Length = 180
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 313 PLDQLDEENAELWPIQHGQVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHRFQEHAPEI 492
PL Q ++ + W I+H G Y +PRS D TSLQ ++ F E
Sbjct: 124 PLLQHQQQQQQAWQIEHESTMTSTQSSGC--YSAPRS----DGSTSLQDMYCFGEQEEGS 177
Query: 493 YSR 501
YSR
Sbjct: 178 YSR 180
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 646 MARMRRLNHHPFQVSIDVMSDKTVDAVVRIFLGPSTTAWQAHERQRQTL 792
M + L HHP IDV+ T+D ++++F AW + ++L
Sbjct: 227 MGSLTNLTHHPHDCGIDVL--VTLDDLIQVFYYLHVDAWNGGLFEHESL 273
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 747 WTQEDADHSIDSFVGHDINRHLERMVIEAAHAGHKGH 637
W +DADH S ++ HLER++ +GH
Sbjct: 709 WHYQDADHDFGSCQAKELVSHLERVLANEPVVVKRGH 745
>03_06_0350 -
33306753-33307060,33307133-33307193,33307283-33307458,
33307551-33307608,33307730-33307834,33307924-33307981,
33308072-33308238
Length = 310
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Frame = +2
Query: 698 SCPTKLSMLWSASSWVQVRLHGRLMSV------NDKRSTCSSWTA 814
SCP WSA W+ VR + S+ +D C++W A
Sbjct: 236 SCPVIEGEKWSAPKWIHVRSYDNASSMKQSEECSDLSENCAAWAA 280
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 397 HVHYLSPRSCLLDDHETSLQHLHRFQEH 480
HVHY++P D E L LH F +H
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDH 144
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +1
Query: 580 DISNAMYLDATEMQN--KTSDMTFMARMRRLNH 672
++SN YLD +EMQN ++D+++++R+ L +
Sbjct: 179 NLSNLRYLDVSEMQNVVYSTDLSWLSRLHLLEY 211
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 667 NHHPFQVSIDVMSDKTVDAVVRIFLGPSTTAWQAHERQRQTL 792
++ P+ S++ + + VVR G +TT WQ+ + TL
Sbjct: 121 SNSPYAASVEARLSNSGNLVVRDASGSTTTLWQSFDHPSNTL 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,969,180
Number of Sequences: 37544
Number of extensions: 485229
Number of successful extensions: 1423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -