Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30448
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)                       29   3.4  
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               29   4.5  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   29   6.0  
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_17227| Best HMM Match : KE2 (HMM E-Value=4.1)
          Length = 162

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  GTSP*RPVTGLKSVFPAVMKCPSARTTWSLPRK 129
           G  P + + GLK   P   KCPS+R T SLP K
Sbjct: 14  GAEPSKNLPGLKPS-PKKRKCPSSRRTVSLPPK 45


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 511 SELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHV-QGSRHVGVLVHVVLAIA 344
           SE+  S+  +  L+  +   ++ H HPED   + GSV++   S HV  ++  ++ +A
Sbjct: 65  SEVCQSVNYDTTLKTCQTSISTRHQHPEDLEEKAGSVYIGSKSHHVNPILARMMDLA 121


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 759 CSRTWTQEDADHSIDSFVGHDINRHLERMVI 667
           C RTWT+ D  HSI S V H   + L+  ++
Sbjct: 355 CRRTWTKHDRHHSILSPVVHHDKQCLDTQLM 385


>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 451 NSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAI 347
           ++ H HPED + + GSV++        L   V+A+
Sbjct: 56  STHHQHPEDLVYDAGSVYLGTKTSPASLARAVMAV 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,068,584
Number of Sequences: 59808
Number of extensions: 545476
Number of successful extensions: 1577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)