Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30448
(815 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02570.1 68417.m00351 cullin family protein similar to cullin... 34 0.098
At1g78540.1 68414.m09154 transcription factor-related weak simil... 34 0.098
At3g28490.1 68416.m03559 oxidoreductase, 2OG-Fe(II) oxygenase fa... 33 0.30
At1g17040.1 68414.m02071 transcription factor-related contains P... 31 0.91
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu... 29 3.7
At5g36270.1 68418.m04375 dehydroascorbate reductase, putative si... 29 4.9
At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin ... 29 4.9
At3g10590.1 68416.m01273 myb family transcription factor contain... 29 4.9
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 28 6.4
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ... 28 6.4
At1g06260.1 68414.m00662 cysteine proteinase, putative contains ... 28 6.4
>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
[Homo sapiens] GI:3639052; contains Pfam profile
PF00888: Cullin family
Length = 738
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -2
Query: 520 LRGSELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHVQG------SRHVGVLVHV 359
LRG E A+IF++HV G + D +++A T SV Q H +V+V
Sbjct: 294 LRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYV 353
Query: 358 VLAIAQHFLHQVGQVDNFSIVAN 290
H L + F I N
Sbjct: 354 TECFQNHTLFHKALKEAFEIFCN 376
>At1g78540.1 68414.m09154 transcription factor-related weak
similarity to STAT protein (GI:2230824) and STATc
protein (GI:13235235) [Dictyostelium discoideum]
Length = 638
Score = 34.3 bits (75), Expect = 0.098
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 774 LMSLPCSRTWTQEDADHSIDSFVGHDINRHLERMVIE 664
++ P SRTW DA + ++VGHD H +++ I+
Sbjct: 598 ILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKID 634
>At3g28490.1 68416.m03559 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Caenorhabditis elegans [GI:607947], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 288
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 698 SCPTKLSMLWSASSWVQVRLHG--RLMSVNDKRSTCSSW 808
SCP WSA+ W+ VR G +L+ V+D S C W
Sbjct: 221 SCPVIEGEKWSATRWIHVRSFGKKKLVCVDDHES-CQEW 258
>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
profile: PF00017 Src homology domain 2; similar to
transcription factor [Danio rerio] (GI:3687402)
Length = 641
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 774 LMSLPCSRTWTQEDADHSIDSFVGHDINRHLERMVI 667
++ P SR+W DA + ++VGHD+ H + I
Sbjct: 570 ILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTI 605
>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
putative similar to preprotein translocase secA subunit,
chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
thaliana]; non-consensus GA donor splice site at exon 4
Length = 1022
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 544 DELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDA 723
DE V+ Y DI ++ + E+ N D + R R L + I ++ T+D
Sbjct: 774 DEAQRKVENYFFDIRKQLF-EFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDD 832
Query: 724 VVRIFLGPST 753
++ +GP T
Sbjct: 833 ILEANIGPDT 842
>At5g36270.1 68418.m04375 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase {Spinacia
oleracea} gi:10952511 gb:AF195783, PMID:11148269
Length = 217
Score = 28.7 bits (61), Expect = 4.9
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +1
Query: 517 GVKVEKITTDELVTFVDEYDMDISN-----AMYLDATEMQNKTSDMTFMARMRRLNHH-P 678
G+ EK LVTF E+ S M+L + + N SDM + + L+HH
Sbjct: 80 GIIEEKYPEPSLVTFPPEFASVGSKIIGAFVMFLTSKDHANDGSDMALLDELEALDHHLK 139
Query: 679 FQVSIDVMSDKTVDAVVRIFLGP 747
V V DK VV + L P
Sbjct: 140 THVGPFVAGDKV--TVVDLSLAP 160
>At3g51710.1 68416.m05670 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 476
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 224 YKPEEV*GH*NLARLVLGGLEIVGDDAKVI-HLTNLMKKMLSYGQY--NMDKYTYVP 385
YKP E N RL L GL++ D++++I + + + L+ G N+ Y+Y P
Sbjct: 217 YKPREKNTTVNFVRLGLKGLDLFDDNSRIIGRIEQPLIRFLALGNRTGNLGLYSYKP 273
>At3g10590.1 68416.m01273 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 206
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 296 DDAKVIHLTNLMKKMLSYGQYNMDKYT---YVPTSLDMYTTCLRDPVFWMIMKRVCNIFT 466
D+ +++++ + K L +Y +K Y+P L+ T L+ P+ MK +
Sbjct: 25 DNKRLVNVAQHLPKPLEEVKYYYEKLVNDVYLPKPLENVTQHLQKPMEMEEMKYMYEKMA 84
Query: 467 VFKNMLPKYTREQFASPESKWRKLPPMSWS 556
N +P+Y +S + +K P W+
Sbjct: 85 NDVNQMPEYVPLAESSQSKRRKKDTPNPWT 114
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 421 SCLLDDHETSLQHLHRFQEHAPEIYSRTVRFPGVKVEKITTDELVTFVDEY 573
+C DH+ LQH+ F S T RF G K+T D L F+ Y
Sbjct: 203 ACNSLDHDPDLQHIPIFAVSTKFFNSMTSRFYG---RKLTFDPLARFLISY 250
>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to (1,4)-beta-xylan endohydrolase GI:5306060 from
[Triticum aestivum] ; contains Pfam profiles PF00331:
Glycosyl hydrolase family 10, PF02018: Carbohydrate
binding domain
Length = 917
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 796 CRAFVVDAHEPAMQSYLDPGRCG 728
C AFVV A LDP +CG
Sbjct: 48 CEAFVVTAESNVSHGVLDPSKCG 70
>At1g06260.1 68414.m00662 cysteine proteinase, putative contains
similarity to thiol-protease, pre-pro-TPE4A protein
GI:3688528 [Pisum sativum]
Length = 343
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 670 HHPFQVSIDVMSDKTVDAVVRIFLGPSTTAWQAHERQRQTLD 795
H PF+++ + +D T FLG +T++ + H++QR D
Sbjct: 81 HLPFKLTDNRFADMTNSEFKAHFLGLNTSSLRLHKKQRPVCD 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,851,793
Number of Sequences: 28952
Number of extensions: 367694
Number of successful extensions: 1077
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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