Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30447
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    93   3e-20
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    33   0.029
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   3.4  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.5  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   5.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   5.9  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   7.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 40/68 (58%), Positives = 54/68 (79%)
 Frame = +1

Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
           I+DVW+ NL +E  +I  ++++Y  V+MDTEFPGVVARP+G F+S+ DY YQ LR NVD 
Sbjct: 22  IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81

Query: 481 LRIIQLGL 504
           L+IIQ+GL
Sbjct: 82  LKIIQIGL 89



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = +3

Query: 495 VRLDLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEF 674
           + L L DE G  P    TWQFNF FNLQ+DMYA +SI+LL  SG+ F+KH+E GIEP +F
Sbjct: 87  IGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADF 146

Query: 675 AELLM 689
           AELL+
Sbjct: 147 AELLI 151


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 18/67 (26%), Positives = 36/67 (53%)
 Frame = +1

Query: 307 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 486
           ++   N  E  + + + V   H+V++D EF G++       ++T   +Y+LLR +     
Sbjct: 2   EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61

Query: 487 IIQLGLT 507
           I+Q+G+T
Sbjct: 62  ILQIGIT 68


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 386 SIATQ*YFWTTCLIIWNSSCKL 321
           S + + + W TCL IW  +CKL
Sbjct: 550 STSARRFRWKTCLKIWKEACKL 571


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 302 IPQSLPPGSDMEPKLATASCIVYPFPNEKNYLFF 201
           +  S+PP    +  +AT SC++  F     Y FF
Sbjct: 726 LKDSMPPNEAADWMIATTSCMLAQFALHSPYAFF 759


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 248 SCIVYPFPNEKNYLFFSTPW 189
           SC+VY FPN+ + L F   W
Sbjct: 58  SCLVYGFPNKVSALKFEWNW 77


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 435 RSKFSNWSCNYSWKFCIHSYPMILLDY 355
           + K S W    +W  CI SY ++L D+
Sbjct: 535 KEKRSGWYKPDTWHVCITSYQLVLQDH 561


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 41  FYHVIQYFHEMYSN*YHSNIQCSLITCSGCFKRPSTGA*FVQNTQ 175
           F H I  + ++ +N  H  I C+LI C G     S      QN+Q
Sbjct: 135 FQHSIPAYVQLTNN--HGTILCALILCKGMLHFDSISFQSPQNSQ 177


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  KISEKQPIILSCDSIFPRNVFKLIPQQYSMFIDN 117
           + S   PI+ + + +   N+ +L+P+QYS  ++N
Sbjct: 814 RYSGMAPIVDADNKLRTENISELLPKQYSNILEN 847


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 316 NHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 414
           +H+L +E   +R + ++ + +  D +F GVV R
Sbjct: 450 DHSLRDELISLRSLAEQKNTIEFDAKFLGVVER 482


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 480 FENNTVRLDLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLP 617
           FENN ++ DL+   G   P        + F  +  + +Q  ID+ P
Sbjct: 452 FENN-IKPDLLQPAGVIHPMVLAEDIKYVFTFRNQLNSQQLIDIFP 496


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 206 FFSTPWFSIYFVY 168
           FF  PW  +YF+Y
Sbjct: 59  FFRNPWLDVYFMY 71


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 179 KSKTTASKKTDNSSRLETDKRYKMPSQVLVPYHFQGAVI 295
           K+ +  S+ T  S+ L+TD R     QVL  +  + A++
Sbjct: 532 KATSNKSRPTTTSTELKTDARLNFQRQVLQDFRQRFAIL 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,166
Number of Sequences: 5004
Number of extensions: 65531
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)