Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30447
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1070 + 33872845-33873726 99 3e-21
09_04_0126 + 14874739-14875581 96 2e-20
08_02_0807 + 21411799-21412665 86 3e-17
04_04_1644 + 35015849-35016838 75 5e-14
07_01_0499 - 3738959-3740068 65 6e-11
10_01_0149 + 1745355-1746230 55 5e-08
06_01_0276 + 2035763-2036770 52 6e-07
10_01_0124 - 1504521-1505303 45 7e-05
06_03_0342 + 19737951-19738772 43 3e-04
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 38 0.008
10_08_0032 - 14288522-14290465 38 0.008
10_08_0041 - 14374684-14377339,14377371-14378233 37 0.013
06_03_0183 + 17642639-17643428,17644507-17644949 36 0.040
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 35 0.053
08_01_0451 + 3979323-3979566,3979649-3980012,3980112-3980330,398... 28 6.1
>02_05_1070 + 33872845-33873726
Length = 293
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/69 (62%), Positives = 54/69 (78%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VW NL EEF +IR VV ++ +VAMDTEFPG+V RP+G FRS ADY Y L+ NVD+
Sbjct: 30 IREVWADNLEEEFALIRDVVDEFPFVAMDTEFPGIVCRPVGAFRSPADYNYATLKANVDM 89
Query: 481 LRIIQLGLT 507
L +IQLGLT
Sbjct: 90 LHLIQLGLT 98
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +3
Query: 549 WQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELLM 689
WQFNF+ F+ D++A DSI+LL SG+ FR++ E G++ FAELLM
Sbjct: 118 WQFNFREFDDARDIFASDSIELLRRSGIDFRRNSERGVDARRFAELLM 165
>09_04_0126 + 14874739-14875581
Length = 280
Score = 96.3 bits (229), Expect = 2e-20
Identities = 40/69 (57%), Positives = 54/69 (78%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VW NL EF +IR++V + +VAMDTEFPGVV RP+G F+S AD+ Y L+ NVD+
Sbjct: 14 IREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNADFNYATLKANVDM 73
Query: 481 LRIIQLGLT 507
L++IQLGLT
Sbjct: 74 LKLIQLGLT 82
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 549 WQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELLM 689
WQFNF+ F+ + D+ A DSIDLL SG+ F +H DG + FAELLM
Sbjct: 102 WQFNFRGFDPRTDVAAADSIDLLRRSGIDFTRHSADGADARRFAELLM 149
>08_02_0807 + 21411799-21412665
Length = 288
Score = 85.8 bits (203), Expect = 3e-17
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VW NL E IR V +Y +VAMDTEFPG+V RP+G FR+T ++ Y L NV++
Sbjct: 18 IREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNFRTTDEFNYANLEANVNM 77
Query: 481 LRIIQLGLT 507
L++IQLGLT
Sbjct: 78 LKLIQLGLT 86
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Frame = +3
Query: 501 LDLMDENGKTPPGYT-----TWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIE 662
L L DE G P T WQFNF+ F+ + D DSI +L G+ F + +G +
Sbjct: 85 LTLSDEGGDLPRRGTGGRRCIWQFNFRGFDPRTDPSNADSIQMLRTCGIDFDRFAAEGAD 144
Query: 663 PLEFAELLM 689
P+ FAELLM
Sbjct: 145 PIRFAELLM 153
>04_04_1644 + 35015849-35016838
Length = 329
Score = 74.9 bits (176), Expect = 5e-14
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGE-FRSTADYQYQLLRCNVD 477
I+ VW HN+ EEF+IIR + + +V+MDTEFPGV+ RP TA +Y LLR NVD
Sbjct: 56 IRRVWAHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVD 115
Query: 478 LLRIIQLGLT 507
L +IQ+G+T
Sbjct: 116 ALHLIQVGIT 125
>07_01_0499 - 3738959-3740068
Length = 369
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-EFRSTADYQYQLLRCNVD 477
++ VW HNL EE +I + + A+DTEFPG V RP + T +Y LL+ NVD
Sbjct: 94 VRSVWAHNLDEEANLIESLFPSFRLAAVDTEFPGTVHRPSAPAYTLTRKQKYALLKKNVD 153
Query: 478 LLRIIQLGLT 507
L ++QLGLT
Sbjct: 154 ELHLVQLGLT 163
>10_01_0149 + 1745355-1746230
Length = 291
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 NLHEEFQIIRQVVQKYHWVAMDTEFPGVV-ARPIGEFRSTADYQYQLLRCNVDLLRIIQL 498
NLH E +IR ++ + +VA+DT+FPGVV P G TAD +Y +R N D L ++QL
Sbjct: 40 NLHREMSLIRSLMPTFPFVAVDTQFPGVVHPHPRGA-GVTADDRYAAVRANADELCLLQL 98
Query: 499 GLT 507
G+T
Sbjct: 99 GIT 101
>06_01_0276 + 2035763-2036770
Length = 335
Score = 51.6 bits (118), Expect = 6e-07
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGV---VARPIGEFRSTADYQYQLLRCN 471
++DVW NL EE + I ++ Y V+MDTEFPG VA P T Y +++ N
Sbjct: 72 VRDVWAANLEEELRSIGALLPTYPVVSMDTEFPGTVHDVATP--RHLRTPRESYAVVKRN 129
Query: 472 VDLLRIIQLGL 504
VD L ++QLGL
Sbjct: 130 VDELHLLQLGL 140
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 549 WQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFA 677
WQFNF F+ + D ++ S+ +L G+ F GI+ +FA
Sbjct: 153 WQFNFAGFDARRDPHSGSSVAMLAAHGVDFTALRRHGIDHGDFA 196
>10_01_0124 - 1504521-1505303
Length = 260
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 NLHEEFQIIRQVVQKYHWVAMDTEFPGVVARP-IGEFRSTADYQYQLLRCNVDLLRIIQL 498
NL E +I +++ +Y +V +D EF GVV P R T D Y L+ NVD + +Q+
Sbjct: 5 NLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTPDEIYAALKSNVDEVPAVQI 64
Query: 499 GLT 507
G+T
Sbjct: 65 GIT 67
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 504 DLMDENGKTPPGYTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAE 680
+L + +P W+ F F+ D + DS++ L N G+ F + G+ F E
Sbjct: 74 NLPTRSSSSPEQEIAWEVVFSDFDAGRDPHVVDSVEFLKNQGIDFDLARQIGVTSTAFGE 133
Query: 681 LLM 689
L+
Sbjct: 134 KLL 136
>06_03_0342 + 19737951-19738772
Length = 273
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVV---ARPIGEFRS----TADYQYQL 459
++ VW N E I+R V + A++ ++PG V A G+ R TA+ +YQ+
Sbjct: 5 VRSVWADNFAAESAILRAVAPCAVYAAINVQYPGCVVSAAGGAGDHRCYYDLTAEERYQV 64
Query: 460 LRCNVDLLRIIQLGL 504
+R N D L+ +QLGL
Sbjct: 65 VRANADELKPLQLGL 79
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 471
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 329 VQSVWQENCMEQFKLVLEALHQPHRNLYIAVDMEFTADAATNMSHRPVTSTSCYQHVRRY 388
Query: 472 VDLLRIIQLGLT 507
V+ I+Q+GLT
Sbjct: 389 VNGGDIVQMGLT 400
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 504 DLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEP 665
D+ E +PP + NF FN+ Y +SI L + G +H + G+ P
Sbjct: 406 DVEGEQAPSPP--IALEINFDFNVNSPKYHGESIHFLSSQGHDLTQHSKRGVTP 457
>10_08_0032 - 14288522-14290465
Length = 647
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 519 NGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELLM 689
+ +PP T + NFK N++ Y + SI L G R+H G+ P F E L+
Sbjct: 241 SSSSPPPITL-EINFKINIKARKYNKKSIAFLSRQGHDLREHRRRGVSPRRFYEGLL 296
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 471
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 158 VKSVWRENYREQFKLVVDALHQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 217
Query: 472 VDLLRIIQLGL 504
V+ I+Q+GL
Sbjct: 218 VNRGDIVQMGL 228
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYH---WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 471
++ VW N E+F+++ + + + H ++A+D EF A + T+ YQ +R
Sbjct: 648 VQSVWRENCMEQFKLVLEALHQPHRHLYIAVDMEFAADAATNVSHRPVTSISCYQHMRRY 707
Query: 472 VDLLRIIQLGLT 507
V+ I Q+GLT
Sbjct: 708 VNGGGIFQMGLT 719
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 516 ENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEP 665
E + P + NF FN+ Y SID L + G +H + G+ P
Sbjct: 725 EGEQAPSPLIALEINFDFNVNSPKYHGKSIDFLSSQGHDLTQHSKRGVAP 774
>06_03_0183 + 17642639-17643428,17644507-17644949
Length = 410
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIG-----EFRS-TADYQYQLL 462
I VW+ N E + V + VA+ ++PG G ++ S TA+ +Y ++
Sbjct: 17 IHSVWHDNFDAESAQLLAVAPRAVHVAVSVQYPGCAVAQAGTSGRKKYGSLTAEKRYDMV 76
Query: 463 RCNVDLLRIIQLGL 504
+ N+D L IQ+GL
Sbjct: 77 KANIDELHPIQVGL 90
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 397 PGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGL 504
PG RP + TA+ +Y +L+ NVD LR IQ+GL
Sbjct: 297 PGGEPRPFEQL--TAEQRYGVLKANVDALRAIQVGL 330
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 35.1 bits (77), Expect = 0.053
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVV---QKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCN 471
+K VW N E+F+++ + +++ ++A+D EF I T+ Y LR
Sbjct: 553 VKSVWRENYREQFKLVVDALNQPRRHLYIAVDMEFAADATTNIRRRPVTSTGCYHHLREF 612
Query: 472 VDLLRIIQLGLT 507
V+ I+Q+GLT
Sbjct: 613 VNRGDIVQMGLT 624
Score = 34.3 bits (75), Expect = 0.093
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 519 NGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEP 665
+ +PP T + NFK N++ Y + SI L G R+H G+ P
Sbjct: 636 SSSSPPPITL-EINFKINIKARKYNKKSIAFLSRQGHDLREHRRRGVSP 683
>08_01_0451 +
3979323-3979566,3979649-3980012,3980112-3980330,
3980713-3980872,3981680-3981817,3982161-3982448
Length = 470
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 349 RQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 456
+ +V++Y + + TE P +VA I + TADY Y+
Sbjct: 414 KDIVKEY--LTLPTEQPKIVAETIVDLARTADYMYK 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,302,264
Number of Sequences: 37544
Number of extensions: 379931
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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