Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30447
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   3e-27
SB_29688| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14)                  31   1.2  
SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03)          31   1.2  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37356| Best HMM Match : Integrin_alpha (HMM E-Value=0.24)           28   6.2  
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_20560| Best HMM Match : Steroid_dh (HMM E-Value=1.9e-21)            28   6.2  

>SB_23743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  118 bits (285), Expect = 3e-27
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = +1

Query: 277 LPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQ 456
           +P   + GI+DVW  NL EEF  IR ++ +Y +VAMDTEFPGVVARPIGEFRSTA+YQ+Q
Sbjct: 1   MPTTVNFGIRDVWQGNLEEEFAKIRNIIDEYPYVAMDTEFPGVVARPIGEFRSTAEYQFQ 60

Query: 457 LLRCNVDLLRIIQLGLT 507
           LLRCNVDLL+IIQLG++
Sbjct: 61  LLRCNVDLLKIIQLGMS 77



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/63 (60%), Positives = 50/63 (79%)
 Frame = +3

Query: 501 LDLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAE 680
           +   +++G+ P    TWQFNFKFNL EDMYAQDSIDLL  SG+QF++HEE+GI+  +FAE
Sbjct: 76  MSFYNDHGQQPSDGATWQFNFKFNLTEDMYAQDSIDLLNRSGIQFKQHEEEGIDVNDFAE 135

Query: 681 LLM 689
           LL+
Sbjct: 136 LLI 138


>SB_29688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 299 PQSLPPGSDMEPKLATASCIVYPFPNEKNYLFFSTPWFSIYFVYFERTKRQC 144
           P  +  G  ++  L        P PNEK Y   S+    I F  FER K+ C
Sbjct: 25  PADIEEGFSLQAPLVYLFGHTSPSPNEKLYNMLSSKIADIVFQRFERNKKAC 76


>SB_50853| Best HMM Match : Clp1 (HMM E-Value=1.2e-14)
          Length = 351

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 311 TSFIPQSLPPGSDMEPKLATASCIVYPFPNEKNYLFFSTPWFSIYFVYFERTKRQC 144
           T+ +P S+  G  ++  L        P PNEK Y   S+    I F  FER K+ C
Sbjct: 190 TASVPGSM--GFSLQAPLVYLFGHTSPSPNEKLYNMLSSKIADIVFQRFERNKKAC 243


>SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03)
          Length = 136

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 511 WMKMERHHLVIQLGNSTLNSIYKKICMRKTL 603
           W +++R +   Q+G +    IYK +C+ KTL
Sbjct: 103 WRRVQRWYCFKQMGRTVCRRIYKYVCVGKTL 133


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 501 LDLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQ 632
           L  +D N      Y +W+ ++K+NLQ  M+  +   LL + G Q
Sbjct: 323 LTYLDRNSTAYNEYFSWKKSYKYNLQHHMWICELCGLLHSGGEQ 366


>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 360 PKVSLGSYGYRISRSSCTTNW 422
           P V  G YG+++ +SSCT  W
Sbjct: 158 PLVGWGIYGFQVPKSSCTVLW 178


>SB_37356| Best HMM Match : Integrin_alpha (HMM E-Value=0.24)
          Length = 118

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 258 CDGILYRLSVSKREELSVFFDAVVFDLFCV 169
           C  I + +S  K+EE+  FF   +F +FCV
Sbjct: 42  CLSIFFFISKDKKEEVLHFFSIRLFKVFCV 71


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 502 LTSWMKMERHHLVIQLGNSTLNSIYKKICMRKTL 603
           LTSW+++ RH LV    N  + SI    C+ ++L
Sbjct: 445 LTSWLQLFRHSLVAHASNDVMMSI-SVTCISRSL 477


>SB_20560| Best HMM Match : Steroid_dh (HMM E-Value=1.9e-21)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 426 FSNWSCNYSWKFCIHSYPMILLDYLSDYLEFFMQI--VIPNIFYTTITAPW 280
           F+ W C+Y  +  IH + M    Y S      + +  V PN+FY+ + A W
Sbjct: 62  FTFWLCHYVHRGFIHPWVM---KYSSPKTPVGISLAGVFPNLFYSYLNADW 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,744,279
Number of Sequences: 59808
Number of extensions: 454133
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)