Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30447
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 84 1e-16
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 84 1e-16
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 33 0.19
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.8
U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 5.5
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +1
Query: 265 GSISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTAD 444
G+ G + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA P+G FRS D
Sbjct: 11 GAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKED 70
Query: 445 YQYQLLRCNVDLLRIIQLG 501
+ YQ + CNV++L++IQ+G
Sbjct: 71 FNYQQVFCNVNMLKLIQVG 89
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 507 LMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELL 686
++++ G+ PP WQFNF F+ EDM++ +S+++L +G+ F + +GI F ELL
Sbjct: 92 MVNDKGELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELL 151
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +1
Query: 265 GSISLPGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTAD 444
G+ G + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA P+G FRS D
Sbjct: 11 GAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKED 70
Query: 445 YQYQLLRCNVDLLRIIQLG 501
+ YQ + CNV++L++IQ+G
Sbjct: 71 FNYQQVFCNVNMLKLIQVG 89
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +3
Query: 507 LMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELL 686
++++ G+ PP WQFNF F+ EDM++ +S+++L +G+ F + +GI F ELL
Sbjct: 92 MVNDKGELPPTGDVWQFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELL 151
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 373 WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLT 507
+VA+D EF G+ I T + +YQ+LR NV R QLGLT
Sbjct: 25 FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLT 68
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 295 CGIKDVWNHNLHEEFQIIRQVVQKYH 372
CG ++ H HEEF +VV KYH
Sbjct: 330 CGAQNEHEHTHHEEFSKTDKVVNKYH 355
>U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical
protein F19C7.3 protein.
Length = 310
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 292 DCGIKDVWNHNLHEEFQIIRQVVQKYHWV 378
DC + +W H LH Q+I Q + YHW+
Sbjct: 202 DCKVIKLWRHQLHP--QLINQFI--YHWM 226
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 VWNHNLHEEFQIIRQVVQKYHWVAMD 387
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 VWNHNLHEEFQIIRQVVQKYHWVAMD 387
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 310 VWNHNLHEEFQIIRQVVQKYHWVAMD 387
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,554,714
Number of Sequences: 27780
Number of extensions: 363904
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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