Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30447
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    24   1.2  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.6  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.6  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 221 RLETDKRYKMPSQVLVPYH 277
           R++  K +KM S  +VPYH
Sbjct: 60  RMKWKKEHKMASMNIVPYH 78


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 301 YH-NHCPLEVIWNQNLRRHL 245
           YH +HC  + +   NLRRHL
Sbjct: 38  YHCSHCDRQFVQVANLRRHL 57


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 360 PKVSLGSYGYRISRSSCTTNWRI 428
           P    GSYG      SC+ +W +
Sbjct: 33  PLFGWGSYGPEAGNVSCSVSWEV 55


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 637 LNCRPEFGNRSIESCAY 587
           L C P   NR I+ C+Y
Sbjct: 176 LGCFPRATNRDIKKCSY 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,824
Number of Sequences: 438
Number of extensions: 4341
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)