Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30447
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,... 98 4e-21
At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,... 98 4e-21
At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,... 92 4e-19
At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,... 90 1e-18
At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,... 74 1e-13
At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,... 73 2e-13
At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,... 73 2e-13
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 70 2e-12
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 50 2e-06
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,... 45 4e-05
At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,... 44 7e-05
At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,... 42 3e-04
At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,... 37 0.011
At5g67410.1 68418.m08500 hypothetical protein 31 0.72
At5g14550.1 68418.m01705 expressed protein contains Pfam profile... 29 2.9
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 28 6.7
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M... 27 8.9
>At1g80780.2 68414.m09478 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 98.3 bits (234), Expect = 4e-21
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 481 LRIIQLGLT 507
L++IQLGLT
Sbjct: 72 LKMIQLGLT 80
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 540 YTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELLM 689
Y WQFNF+ F+L D++A DSI+LL SG+ K+ DGI+ FAELLM
Sbjct: 96 YCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLM 146
>At1g80780.1 68414.m09477 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 274
Score = 98.3 bits (234), Expect = 4e-21
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VWN NL EE +IR VV + +VAMDTEFPG+V RP+G F+S ADY Y+ L+ NV++
Sbjct: 12 IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNI 71
Query: 481 LRIIQLGLT 507
L++IQLGLT
Sbjct: 72 LKMIQLGLT 80
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 540 YTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAELLM 689
Y WQFNF+ F+L D++A DSI+LL SG+ K+ DGI+ FAELLM
Sbjct: 96 YCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLM 146
>At2g32070.1 68415.m03919 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 275
Score = 91.9 bits (218), Expect = 4e-19
Identities = 37/69 (53%), Positives = 54/69 (78%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VWN NL E +IR+VV + +VAMDTEFPG+V RP+G F++ +Y Y+ L+ NV++
Sbjct: 12 IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNI 71
Query: 481 LRIIQLGLT 507
L++IQLGLT
Sbjct: 72 LKMIQLGLT 80
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Frame = +3
Query: 501 LDLMDENGKTPP-----GYTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIE 662
L DE G P Y WQFNF+ F+L+ D+YA DSI+LL SG+ F K+ E GI+
Sbjct: 79 LTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGID 138
Query: 663 PLEFAELLM 689
FAELLM
Sbjct: 139 SKRFAELLM 147
>At5g10960.1 68418.m01273 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 277
Score = 89.8 bits (213), Expect = 1e-18
Identities = 37/69 (53%), Positives = 55/69 (79%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 480
I++VW++NL EEF +IR++V K+ ++AMDTEFPGVV +P+ F+ D Y+ L+ NVDL
Sbjct: 12 IREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDL 71
Query: 481 LRIIQLGLT 507
L++IQ+GLT
Sbjct: 72 LKLIQVGLT 80
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Frame = +3
Query: 495 VRLDLMDENGKTPP----GYTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGI 659
V L DENG P + WQFNF+ FN+ ED+YA +SI+LL G+ F+K+ E GI
Sbjct: 77 VGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGI 136
Query: 660 EPLEFAELLM 689
+ + F EL+M
Sbjct: 137 DVVRFGELMM 146
>At5g22250.1 68418.m02591 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEF--RSTADYQYQLLRCNV 474
I+DVW +NL EF +IR +V+ Y +++MDTEFPGV+ + + R +Y Y LL+ NV
Sbjct: 14 IRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNV 73
Query: 475 DLLRIIQLGLT 507
D L +IQ+GLT
Sbjct: 74 DALSLIQVGLT 84
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 504 DLMDENGKTPPGYTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEFAE 680
+L D G+ Y W+FNF+ F+++ D +A DSI+LL G+ F ++ +G+E FAE
Sbjct: 91 NLPDLGGQKNRRYI-WEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAE 149
Query: 681 LLM 689
L+M
Sbjct: 150 LMM 152
>At1g15920.2 68414.m01910 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 462
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 463 RCNVDLLRIIQLGLT 507
+ NV++L++IQLGLT
Sbjct: 76 KANVNMLKLIQLGLT 90
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +3
Query: 501 LDLMDENGKTPPGYTT----WQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEP 665
L L DE G P T WQFNF+ FN+ DM+A DSI+LL S + K+ E G++
Sbjct: 89 LTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDA 148
Query: 666 LEFAELLM 689
FAELLM
Sbjct: 149 KRFAELLM 156
>At1g15920.1 68414.m01909 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 286
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Frame = +1
Query: 301 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPI------GEFRSTADYQYQLL 462
I++VWNHNL +E +I Q + + +VAMDTEFPG+V + + + +Y Y L
Sbjct: 16 IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75
Query: 463 RCNVDLLRIIQLGLT 507
+ NV++L++IQLGLT
Sbjct: 76 KANVNMLKLIQLGLT 90
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +3
Query: 501 LDLMDENGKTPPGYTT----WQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEP 665
L L DE G P T WQFNF+ FN+ DM+A DSI+LL S + K+ E G++
Sbjct: 89 LTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDA 148
Query: 666 LEFAELLM 689
FAELLM
Sbjct: 149 KRFAELLM 156
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +1
Query: 280 PGGSDCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQL 459
P G ++VW NL EF++I +++ Y +++MDTEFPGV+ + F + D Y L
Sbjct: 12 PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 70
Query: 460 LRCNVDLLRIIQLGLT 507
L+ NVD L +IQ+GLT
Sbjct: 71 LKANVDALSLIQVGLT 86
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Frame = +3
Query: 495 VRLDLMDENGKTPP-------GYTTWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEE 650
V L L D NG P G+ W+FNF+ F++ D +A DSI+LL G+ F ++
Sbjct: 83 VGLTLSDVNGNLPDLGDDLHRGFI-WEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCR 141
Query: 651 DGIEPLEFAELLM 689
DG+E FAEL+M
Sbjct: 142 DGVESERFAELMM 154
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/66 (33%), Positives = 41/66 (62%)
Frame = +1
Query: 310 VWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRI 489
VW N+ EE + + ++++ +A DTE+PG++ R F S++D Y+ ++ NV+ ++
Sbjct: 12 VWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENTKL 69
Query: 490 IQLGLT 507
IQ G T
Sbjct: 70 IQCGFT 75
>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 278
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Frame = +1
Query: 307 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 486
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKET--PMDASDEIRYRDMKFNVDNTH 61
Query: 487 IIQLGLTSWMK 519
+IQLGLT + K
Sbjct: 62 LIQLGLTLFGK 72
Score = 30.7 bits (66), Expect = 0.95
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 546 TWQFNFK-FNLQEDMYAQDSIDLLPNSGLQFRKHEEDGIEPLEF 674
TW+ N FN + + SI L N+GL K E+GI EF
Sbjct: 77 TWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF 120
>At1g27890.1 68414.m03417 CCR4-NOT transcription complex protein,
putative contains similarity to SWISS-PROT:Q9UFF9
CCR4-NOT transcription complex, subunit 8 (CAF1-like
protein, CALIFp) [Human]
Length = 302
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +1
Query: 307 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 486
+VW N E IR ++ + +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 60
Query: 487 IIQLGLT 507
+IQLG T
Sbjct: 61 LIQLGFT 67
>At1g27820.1 68414.m03409 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 310
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 307 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 486
+VW N E IR ++ +A+DTEFPG + ++ + +Y+ ++ NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKET--PMDASEEIRYRDMKFNVDNTH 65
Query: 487 IIQLGLT 507
+IQLG T
Sbjct: 66 LIQLGFT 72
>At3g44240.1 68416.m04747 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q60809 CCR4-NOT
transcription complex, subunit 7 (CCR4-associated factor
1, (CAF1) [Mus musculus]
Length = 239
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 343 IIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLT 507
+I ++ Y ++A+DTEFP + +T + +Y + +VD ++IQLGLT
Sbjct: 3 LIEDCLRSYRFIAIDTEFPSTLRETTQ--HATDEERYMDMSFSVDRAKLIQLGLT 55
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 501 LDLMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLPNSGLQFRKHEEDGI 659
L L D NG+ TW+ NF +D + SI+ L +GL RK E+GI
Sbjct: 54 LTLFDINGRIGG---TWEINFSDFGVDDARNEKSIEFLRRNGLDLRKIREEGI 103
>At5g67410.1 68418.m08500 hypothetical protein
Length = 287
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 541 IQLGNSTLNSIYKKICMRKTL*TYYQTQVYSSENMKKMV*SHWNSL 678
I L N+ L I K IC+ KTL + + V S KK + + SL
Sbjct: 62 ISLHNALLRGILKNICLSKTLPPFVKNGVESDNKKKKQLNGAFQSL 107
>At5g14550.1 68418.m01705 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 377
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/78 (20%), Positives = 40/78 (51%)
Frame = +1
Query: 418 IGEFRSTADYQYQLLRCNVDLLRIIQLGLTSWMKMERHHLVIQLGNSTLNSIYKKICMRK 597
+ F T D +Y + +R + G + W+ + R H I + ++++ ++++ C RK
Sbjct: 181 VDSFADTKDSRYNPRMNPIIPVRNWRKG-SQWVVLNRKHAEIVVNDTSVFPMFQQHCRRK 239
Query: 598 TL*TYYQTQVYSSENMKK 651
+L +++ + +E K+
Sbjct: 240 SLPEFWRDRPVPAEGWKE 257
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 122 SGCFKRPSTGA*FVQN---TQNKSKTTASKKTDNSSRLETDKRYKMPSQVLVPYHFQGAV 292
SG R S+ A +N + KS ++ K++ L++ K K P Q LVP H + ++
Sbjct: 397 SGSGNRKSSSAKVAKNHPVEEPKSPAPSNSKSEQQ-HLKSTKASKAPKQKLVPQHMKNSI 455
>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 442
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 385 DTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTSWMKMERHHLVIQL 549
D E + ARP + LL ++LL +++ G T W R+ +V L
Sbjct: 112 DQETYYISARPRSLVLGARTKEVTLLETELELLTLLRRGQTDWSTFSRNRIVAAL 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,893
Number of Sequences: 28952
Number of extensions: 326771
Number of successful extensions: 865
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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