Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30445
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 504 STLTLKYLDEY-SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 346
           + L ++ +D   SG +I   G+ + +++ +G   L      +S S+NT+  G Y
Sbjct: 330 NALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMY 383


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 591 KVTSI*GTHAAPVGSRSARIYRASCYLCHSTLT 493
           K+  + G H    G  +  I+R SC   HS LT
Sbjct: 401 KLEFVVGQHRILKGPANPDIFRVSCATEHSQLT 433


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 591 KVTSI*GTHAAPVGSRSARIYRASCYLCHSTLT 493
           K+  + G H    G  +  I+R SC   HS LT
Sbjct: 107 KLEFVVGQHRILKGPANPDIFRVSCATEHSQLT 139


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 452 TLITNPEYSSKYLR 493
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 504 STLTLKYLDEY-SGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 346
           + L ++ +D   SG +I   G+ + +++ +G   L       S S+NT+  G Y
Sbjct: 330 NALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMY 383


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -2

Query: 477 EYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQ 298
           E+ G+   +G   ++L SG+    LD  GH  ++ ++   +G +I    +L +     V+
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH--AAFISMRHRGAHITDIVVLVVAADDGVK 231

Query: 297 DSSLDS 280
           + +L S
Sbjct: 232 EQTLQS 237


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -2

Query: 555 VGSRSARIYRASCYLCHSTLTLKYLDEYSG 466
           +  R    Y   C LC       Y D YSG
Sbjct: 207 INRRLKETYSNMCALCEKPEVCDYPDIYSG 236


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -2

Query: 555 VGSRSARIYRASCYLCHSTLTLKYLDEYSG 466
           +  R    Y   C LC       Y D YSG
Sbjct: 207 INRRLKETYSNMCALCEKPEVCDYPDIYSG 236


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -2

Query: 555 VGSRSARIYRASCYLCHSTLTLKYLDEYSG 466
           +  R    Y   C LC       Y D YSG
Sbjct: 207 INRRLKETYSNMCALCEKPEVCDYPDIYSG 236


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 407  VTLPSPLNRLRHSPP 451
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,690
Number of Sequences: 438
Number of extensions: 3702
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)