Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30444
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.62
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 1.1
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 1.1
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.9
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 27 3.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.6
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 7.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.6
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 500 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 399
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 631 FVHGGLKVPVVFEGVSGAITVDDTVIT 551
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 437 QQESLLEVYPRVGKQQSLLQDHVHEDKQYLKLDNTKGSSDD 559
++ +L ++PR+ + ++L +H D Q+L + SDD
Sbjct: 211 KKTDMLNLFPRIAEHDAVLSTSLHADPQFLDFLESCFRSDD 251
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 737 LRCAPRLHGLRWRPYLHQVS 678
L A +LHG+RW Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 112 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 228
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 27.1 bits (57), Expect = 3.3
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Frame = +2
Query: 371 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHEDKQYLKLDNTKGS 550
RP V P++P+ + + +++ + + K + V E + L
Sbjct: 28 RPTVSMPSQPESSAMLEDDGMVKRKPFAAIGEAIPKVIDTTGESVREAFEEFLLS----F 83
Query: 551 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 685
SDDR+ GD+ + +Y++ +MYE ++ Y YN V+ L
Sbjct: 84 SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 348 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 440
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 674 VMTLDEDMAANEDR----EALGHSGEVSGYPQLLHG 769
V+TLDE + ++GH+ E YPQ+LHG
Sbjct: 253 VVTLDEHEGGLRNLLNFGHSIGHAYEAILYPQILHG 288
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 248 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 69
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 68 EASAHTARTKA 36
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,563
Number of Sequences: 5004
Number of extensions: 74293
Number of successful extensions: 277
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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