Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30444
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)                       29   3.5  
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    28   8.2  

>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +1

Query: 415 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPRGQTVPEAR 534
           S++P +   R S GSL P  +T+  TSRS PR ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 21/91 (23%), Positives = 43/91 (47%)
 Frame = +2

Query: 323 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 502
           DLH  + Q  +Q G     + +  + QQ  ++  Q+Q QQ+ L     +  ++QS +++ 
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQL----QKKQQKQSSMEEK 613

Query: 503 VHEDKQYLKLDNTKGSSDDRIIYGDSTADTF 595
           +  + + + L    GSS +  +    + D F
Sbjct: 614 LSSEIEKMTLATGDGSSKEGSLMDPVSVDEF 644


>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 716 EALGHSGEVSGYPQLLHGTSSPTKRCCKRSTD 811
           E LGH   V+G  + + G  + T+R CK S D
Sbjct: 18  ETLGHRHIVTGETRWIDGVKNQTRRMCKSSDD 49


>SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)
          Length = 603

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 628 VHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLVDMILK*TLLFSNTGVNFQE 449
           ++ G K  +VF+ VS ++ + ++          + V FVLV   ++  L F  + +NF+E
Sbjct: 283 INSGKKAEMVFDYVSDSLELQESFWRFFVPEHSISVPFVLVGHTVEPALSFDRSHINFRE 342

Query: 448 TFL 440
             L
Sbjct: 343 MLL 345


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 659 REYNSVMTLDEDMAANEDREALGHSGE-VSGYPQLLHGTSSPTKRC 793
           RE NS+ +L  D++ N ++ A+G   E VS     +    +P KRC
Sbjct: 764 RENNSINSLPLDISQNREKAAMGLVNEDVSPEKFAVESGETPPKRC 809


>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +2

Query: 662 EYNS--VMTLDEDMAANEDREALGHS-GEVSGYP-QLLHGTSSPTKRCCKRSTD*YVET 826
           +YNS  V T+   + AN     +G     + G   QLL   +SPT   C+R +  YV+T
Sbjct: 433 QYNSIYVRTVQLHLCANSTTPFMGRQYNSIYGQTVQLLSCANSPTPAMCERYSSSYVQT 491


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,633,149
Number of Sequences: 59808
Number of extensions: 574404
Number of successful extensions: 1904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)