Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30444
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56760.1 68416.m06313 calcium-dependent protein kinase, putat...    32   0.41 
At1g62250.2 68414.m07023 expressed protein                             30   1.7  
At1g62250.1 68414.m07022 expressed protein                             30   1.7  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.8  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   5.1  
At5g09400.1 68418.m01089 potassium transporter family protein si...    28   6.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   6.7  
At1g56660.1 68414.m06516 expressed protein                             28   6.7  

>At3g56760.1 68416.m06313 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 577

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
 Frame = +2

Query: 422 LQRQNQQESLLEVYPRVGKQQSLLQDHVHEDK--QYLKLDNTKGSSDDRIIYGDSTADTF 595
           +  QN + ++L+      K   +L D VH     QY KLD  +  +    +Y     +T+
Sbjct: 448 ISMQNYKTAILKSSTEATKDSRVL-DFVHMISCLQYKKLDFEEFCASALSVYQLEAMETW 506

Query: 596 KHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANED-REALGHS-GEVS--GYPQLL 763
           + H      +YE D    +   E  + + L   +  +   ++ + HS G++S  G+ +LL
Sbjct: 507 EQHARRAYELYEKDGNRVIMIEELATELGLGPSVPVHVVLQDWIRHSDGKLSFLGFVRLL 566

Query: 764 HGTSSPT 784
           HG SS T
Sbjct: 567 HGVSSRT 573


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 29  LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 157
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 29  LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 157
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 291 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 467
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 468 VLENNRV 488
             E  R+
Sbjct: 136 KDERPRL 142


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 374 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -3

Query: 215 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 36
           F +S+  S F+   +  ++A  ++   MTT  +SC    S+ LG    L+   HT+R   
Sbjct: 411 FFSSVPGSAFWPVLFIANIAALIASRTMTTATFSC-IKQSTALGCFPRLKI-IHTSRKFM 468

Query: 35  NKVSLILAQW 6
            ++ + +  W
Sbjct: 469 GQIYIPVLNW 478


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 421 TPKTKPARKSPGSLPPCWKTTEFTSRSCPRGQTVP 525
           +P T P   +PG  PP   TT     S P   T P
Sbjct: 467 SPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTP 501


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 177 EGKEGRGYQGSREASDRKRQEEHHGLAYQLWTKDGKE 287
           +GK+ +G +G  E  D ++++EH     ++  KD K+
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKK 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,809
Number of Sequences: 28952
Number of extensions: 402714
Number of successful extensions: 1323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)