Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30443
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   108   6e-25
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   107   8e-25
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    27   1.4  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   4.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   7.3  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   7.3  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   7.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.3  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  108 bits (259), Expect = 6e-25
 Identities = 49/78 (62%), Positives = 65/78 (83%)
 Frame = +1

Query: 19  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 199 AWRHFYWYLTNEGIEYLR 252
            W  FY+ LTNEG+EYLR
Sbjct: 60  NWGWFYYTLTNEGVEYLR 77



 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = +3

Query: 246 LENFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 425
           L  +LHLP E+VPAT KR VR    R    GRP+   RS+   + YRR          +K
Sbjct: 76  LREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EK 123

Query: 426 KAD-VGPGSADLEFKGGYGR 482
           K D   PG     F+GG+GR
Sbjct: 124 KDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  107 bits (258), Expect = 8e-25
 Identities = 49/78 (62%), Positives = 64/78 (82%)
 Frame = +1

Query: 19  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 199 AWRHFYWYLTNEGIEYLR 252
            W  FY+ LTNEG+EYLR
Sbjct: 60  NWGWFYYTLTNEGVEYLR 77



 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 30/79 (37%), Positives = 38/79 (48%)
 Frame = +3

Query: 246 LENFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 425
           L  +LHLP E+VPAT KR VR    R    GRP+   R++ D + YRR           K
Sbjct: 76  LREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRRA--------EKK 123

Query: 426 KADVGPGSADLEFKGGYGR 482
                P      F+GG+GR
Sbjct: 124 DEGAAPSGFAPSFRGGFGR 142


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 382 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKKF 251
           + DL    RA +  RP  PR +  V   ++ +   I+  +C++F
Sbjct: 3   FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQRF 46


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 376 DLSSAERAGASGRPTGPRRT 317
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 20/91 (21%), Positives = 39/91 (42%)
 Frame = -1

Query: 463 NSRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVA 284
           +S S+ P  TS+ +S  ++  ++     +  S +  +  S  PT    T+S  +   S +
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS-S 352

Query: 283 GTISGGRCKKFSSIQYPHWLGTSKSASRQTV 191
            + S       SS  +   + +S S S  T+
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 101 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 193
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 342 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 455
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 YLTNEGIEYLRISCTFLLKLCLQHLS 297
           Y++N+GI  LR     L KL L HLS
Sbjct: 349 YMSNKGIISLRDEFLVLSKLDLMHLS 374


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 270 PEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 377
           P I P ++   V   TVR G    PD P+ S   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,025
Number of Sequences: 5004
Number of extensions: 37850
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)