Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30443
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 138 4e-33
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 1.1
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.9
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.7
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 27 7.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 138 bits (333), Expect = 4e-33
Identities = 58/78 (74%), Positives = 71/78 (91%)
Frame = +1
Query: 19 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 199 AWRHFYWYLTNEGIEYLR 252
W+H+YW LTNEGI YLR
Sbjct: 61 CWKHYYWNLTNEGITYLR 78
Score = 61.7 bits (143), Expect = 4e-10
Identities = 41/84 (48%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +3
Query: 246 LENFLHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE-DRSAYRRTPAAPGVA 413
L +FLHLP EIVPATL+R V R ET R P G P P + DR +YRR P PGV
Sbjct: 77 LRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGDRDRESYRRGP-PPGV- 134
Query: 414 PHDKKADVGPGSADLEFKGGYGRG 485
+ K G G EF+ G+GRG
Sbjct: 135 --EGKGGAGSGFKP-EFRQGFGRG 155
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 387 RTPAAPGVAPHDK-KADVGPGS 449
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 396 AAPGVAPHDKKADVGP 443
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 217 WYLTNEGIEYLRISCTFLLKLCLQHLSAQYVQRQYAVALLVV 342
WY + EY R+ +L + CL+++ + + R++ V + V
Sbjct: 463 WYSSPYPEEYQRLKKIYLCEFCLKYMKSPTILRRHMVVTVTV 504
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 324 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 443
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +3
Query: 261 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 407
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 324 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 443
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 43 VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 138
+A +++L K + + APK +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 115 TELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRISCTFLLKLCLQHL 294
T LE+ + M + KS G K++ R YL +EG Y R T LLK+ +
Sbjct: 2066 TALERFHKDVNVAMMITGKSTGGDKKEMDMRP---YLYDEGDSYERPFYTTLLKMLYEVA 2122
Query: 295 SAQYVQRQY 321
++ + ++QY
Sbjct: 2123 TSTFYEKQY 2131
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 336 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 449
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,840
Number of Sequences: 59808
Number of extensions: 297958
Number of successful extensions: 1052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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