Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30443
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   112   1e-25
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   109   2e-24
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   105   1e-23
At5g43000.1 68418.m05244 hypothetical protein                          29   1.5  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.5  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    28   4.7  
At5g36210.1 68418.m04365 expressed protein                             27   6.2  
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    27   6.2  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   8.2  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  112 bits (270), Expect = 1e-25
 Identities = 47/78 (60%), Positives = 63/78 (80%)
 Frame = +1

Query: 19  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 199 AWRHFYWYLTNEGIEYLR 252
           AW H+YW+LTNEGI++LR
Sbjct: 61  AWMHYYWFLTNEGIDFLR 78



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +3

Query: 234 GY*ILENFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTP 395
           G   L  +L+LP EIVPATLK+  +      G  G RP  P R        DR  YR  P
Sbjct: 73  GIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGP 132

Query: 396 AAPGVAPHDKKADVGPGSADLEFKGGYGRGR 488
            + G   +  KA   P      F+GG G  R
Sbjct: 133 KSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  109 bits (261), Expect = 2e-24
 Identities = 48/78 (61%), Positives = 62/78 (79%)
 Frame = +1

Query: 19  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 199 AWRHFYWYLTNEGIEYLR 252
           AW H+YW+LTNEGIE+LR
Sbjct: 60  AWMHYYWFLTNEGIEFLR 77



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 234 GY*ILENFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAP 404
           G   L  +L+LP ++VPATLK+S +       GP G R   P RS  DR  +  R     
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRG 131

Query: 405 GVAPHDKKADVGPGSADLEFKGGYGR 482
           G    D+K    P      F+GG GR
Sbjct: 132 GPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  105 bits (253), Expect = 1e-23
 Identities = 47/78 (60%), Positives = 61/78 (78%)
 Frame = +1

Query: 19  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 198
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 199 AWRHFYWYLTNEGIEYLR 252
           AW H+YW+LTNEGIE+LR
Sbjct: 60  AWMHYYWFLTNEGIEFLR 77



 Score = 35.5 bits (78), Expect = 0.023
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
 Frame = +3

Query: 234 GY*ILENFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRR 389
           G   L  +L+LP ++VPATLK+S +       GP G R   P           DR  YR 
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRA 131

Query: 390 TPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 485
            P A G    +K     P      F+G   G+GRG
Sbjct: 132 GPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At5g43000.1 68418.m05244 hypothetical protein 
          Length = 282

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 214 YWYLTNEGIEYLRISCTFLLKLCLQHL---SAQYVQRQYAVALL 336
           +W  TN+G  Y      +LL LC+ H+   +  YV  ++ + LL
Sbjct: 81  FWLYTNDGSLYWHTLNAYLLMLCIVHVIGSTISYVSHKHYLVLL 124


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 106 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 195
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 220 YLTNEGIEYLRISCTFLLKLCLQHLSAQYVQRQYAVALLVVL 345
           Y  N    + R SC + + +C+   S   V +QY+   LVVL
Sbjct: 227 YAANHKKLWTRFSCGYSMHVCMDFESKSLVLQQYSDGPLVVL 268


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 16  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 114
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 124 EKIPNLQVIKAMQSLKSRGYVKEQFAWR--HFYWYLTNEGIEYLRISCTFLLKLC 282
           ++IP+ ++      L  R Y    FA +    Y+ + N G+   + +  F+LK C
Sbjct: 59  DEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKAC 113


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 111 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 25
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,606,918
Number of Sequences: 28952
Number of extensions: 203406
Number of successful extensions: 602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)