Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30442
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 166 2e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 145 6e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 2e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 9e-21
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 1e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 4e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 2e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.071
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.12
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.50
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.7
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 6.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.1
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 166 bits (404), Expect = 2e-42
Identities = 78/85 (91%), Positives = 82/85 (96%)
Frame = +1
Query: 1 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct: 114 SNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGY 255
AI+RLDLAGRDLTDYLMKIL ERGY
Sbjct: 174 AIMRLDLAGRDLTDYLMKILMERGY 198
Score = 152 bits (368), Expect = 6e-38
Identities = 72/85 (84%), Positives = 77/85 (90%)
Frame = +3
Query: 255 SFTTTAEREIVRDINEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 434
+F+TTAEREIVRDI EKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR P
Sbjct: 199 TFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAP 258
Query: 435 EALFQPSFLGMEACGIHETTYNSII 509
EALFQPS LG+E GIHE TYNSI+
Sbjct: 259 EALFQPSALGLENAGIHEATYNSIM 283
Score = 116 bits (279), Expect = 3e-27
Identities = 53/60 (88%), Positives = 57/60 (95%)
Frame = +1
Query: 532 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 711
DLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLST
Sbjct: 292 DLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLST 351
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 145 bits (351), Expect = 6e-36
Identities = 88/242 (36%), Positives = 136/242 (56%), Gaps = 6/242 (2%)
Frame = +1
Query: 4 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P A
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Query: 184 ILRLDLAGRDLTDYLMKILTERGYRSLPPPSGKSFVTSMR-SC---ATSLLTSSRKWPPL 351
I + ++ GRD+TDYL L + G+ L + K V ++ C A+ + W
Sbjct: 180 IQQEEIGGRDVTDYLQLQLRKSGH-ELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEH 238
Query: 352 HPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS*VRRGHP- 528
P + L + T+ T+ A + NP + A+ + S +
Sbjct: 239 KPQIHTYQLPDNQTITLG---TECFSAPEVLFNP-EMMGSEASGLHIQLFKSILLSDIDL 294
Query: 529 -*DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 705
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASL
Sbjct: 295 RSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASL 354
Query: 706 ST 711
ST
Sbjct: 355 ST 356
Score = 84.2 bits (199), Expect = 2e-17
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +3
Query: 264 TTAEREIVRDINEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL 443
++AE+EIVR+I EK CYVA DF E+ + +Y+LPD Q IT+G E F PE L
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVL 266
Query: 444 FQPSFLGMEACGIHETTYNSII 509
F P +G EA G+H + SI+
Sbjct: 267 FNPEMMGSEASGLHIQLFKSIL 288
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 110 bits (264), Expect = 2e-25
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = +1
Query: 1 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 180
ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Query: 181 AILRLDLAGRDLTDYLMKILTERGY 255
+ RLD+AGRD T YL+ +L +GY
Sbjct: 174 LVGRLDVAGRDATRYLISLLLRKGY 198
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/91 (42%), Positives = 60/91 (65%)
Frame = +3
Query: 243 RARLSFTTTAEREIVRDINEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 422
R +F TA+ E VR++ EKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER
Sbjct: 195 RKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSER 254
Query: 423 FRCPEALFQPSFLGMEACGIHETTYNSIISA 515
+ CPE LFQP +G E G+ E +++I +A
Sbjct: 255 YECPECLFQPHLVGSEQPGLSEFIFDTIQAA 285
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Frame = +1
Query: 535 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 681
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 682 GGSILASL 705
GG++LA +
Sbjct: 353 GGAVLADI 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 9e-21
Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 30/262 (11%)
Frame = +1
Query: 4 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIY 159
NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+
Sbjct: 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA 197
Query: 160 EGYALPHAILRLDLAGRDLTDYLMKILTERGYRSLPPPSGKSFVTSMRSCATSLLTSSRK 339
EGY + +I + LAGRD+T ++ +L + R+ P S K+ C ++
Sbjct: 198 EGYVIGSSIKTMPLAGRDVTYFVQSLLRD---RNEPDSSLKTAERIKEECCYVCPDIVKE 254
Query: 340 WPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAAS----TRPHITPS 507
+ P R L + S T D +R + + ++A+S P + +
Sbjct: 255 FSRF-DREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDN 313
Query: 508 *VRRGHP*D----LYANTVLSGGTTMYPGIADRMQKEITALAPST--------------M 633
V + P D LY N VLSGG+T++ +R+Q+++ + +
Sbjct: 314 -VVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGV 372
Query: 634 KIKIIAPPERKYSVWIGGSILA 699
+ +I+ ++ +VW GGS+LA
Sbjct: 373 DVNVISHKRQRNAVWFGGSLLA 394
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 294 INEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQP 452
I E+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 7 REKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPH 180
R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G +
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILS 190
Query: 181 AILRLDLAGRDLTDYLMKILTERGYRSLP 267
R+ G + YL+K+ + Y S P
Sbjct: 191 EAKRISWGGSQSSSYLLKLFQIK-YPSFP 218
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 535 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 690
L +N +++GG PG+ R+++E+T++ P I + W G S
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 417 ERFRCPEALFQPSFLGMEACGIHE 488
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/88 (30%), Positives = 44/88 (50%)
Frame = +1
Query: 4 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 113 NRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKG 172
Query: 184 ILRLDLAGRDLTDYLMKILTERGYRSLP 267
+G + D L + L ++ + +P
Sbjct: 173 YQVQHFSGNAINDILAQTLRDKNFEVMP 200
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +1
Query: 535 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 705
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 706 ST 711
T
Sbjct: 405 GT 406
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 348 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 452
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +1
Query: 4 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 183
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 184 ILRLDLAGRDLTDYLMKILTE 246
+L L GR +T +L +L E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 2e-06
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Frame = +3
Query: 273 EREIVRDINEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------ 392
E IV +I E +CYV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 393 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 506
QV+ + NERF PE LF PS + + GI E S+
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 112 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYRSL 264
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y +
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMM 209
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 535 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 660
L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 535 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASL 705
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASL 401
Score = 44.4 bits (100), Expect = 2e-05
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Frame = +3
Query: 255 SFTTTAEREIVRDINEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 434
S+ +R ++ + E + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 435 EALFQPSFLGMEAC---------GIHETTYNSIIS 512
E LF PSF + G+HE Y SI++
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILA 334
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/77 (22%), Positives = 40/77 (51%)
Frame = +1
Query: 10 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 189
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 190 RLDLAGRDLTDYLMKIL 240
+++ G D+T MK+L
Sbjct: 320 KINYGGDDITLLFMKLL 336
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 532 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSI 693
+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACI 584
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.071
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 53 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 187
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 50 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 187
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 50 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 187
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 50 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 187
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 26 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 187
SC+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 26 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 187
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 26 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 187
SC+ ++ P T S S P VPP S T + PT ST SP P+
Sbjct: 228 SCTTSTSIP--TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 20 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 187
P S S ST PP S S + + + SC T ++ PT +T T + P+
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 26 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTKDTHSPTP 184
SC+ ++ PP + + P + P VPP S TP T T C ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 20 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 187
P S S ST PP S S + + SC T ++ PT +T T + P+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +2
Query: 20 PRSCSKHSTRP-PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 184
P S S T P S S C+ T +PP T P ST T +P P
Sbjct: 319 PASTSSTGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 74 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 178
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 259 SLPPPSGKSFVTSMRSCATSLLTSSR--KWPPLHPAAPSRSLTNFPTVRSSLSETKDSVA 432
S P S S V+S A S L S+ + PPL P P S + + ++ S++ + A
Sbjct: 148 SPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASA 207
Query: 433 QRLSSN 450
LSS+
Sbjct: 208 SALSSD 213
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 74 PCSRCTRPVVPPVSCWTPATVSPTPCPST 160
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 50 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 157
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 90 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 242
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 259 SLPPPSGKSFVTSMRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSL 408
S+PPPS S + S A + +S PP PAAP +S + P++ S++
Sbjct: 148 SIPPPSPAS-APPIPSKAPPIPSSLP--PPAQPAAPVKSPPSAPSLPSAV 194
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 2 PTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSP 178
PT + +S P SP+ P T P P S ++P + S +P T ++SP
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP---TSPSYSP 1636
Query: 179 T 181
T
Sbjct: 1637 T 1637
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 4.7
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +3
Query: 201 SRSRPHRLP--HEDPHRARLSFTTT-AEREIVRDINEKLC--YVALDFEQEMATAASSSS 365
SRS HRL + P + FT + + I+ I L Y L ++ S
Sbjct: 61 SRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSIQRGLLRRYFTLQILTKIDELVISGF 120
Query: 366 LEKS--YELPDGQVITIGNERFRCPEALFQPS 455
++KS ++ DG+VI G+E F LF P+
Sbjct: 121 VKKSPNEDIKDGRVIHAGHEGFIPKRILFLPN 152
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 283 SFVTSMRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 453
+F + S A SS + P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 601 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 711
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 343 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 507
PP+ +PS SL P S + + S R ++ +S + K + P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 68 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 208
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,915
Number of Sequences: 5004
Number of extensions: 72285
Number of successful extensions: 349
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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