Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30441
(831 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 141 6e-34
AC006791-4|AAM97974.1| 603|Caenorhabditis elegans Metabotropic ... 31 1.3
AC006791-3|ABM01864.1| 906|Caenorhabditis elegans Metabotropic ... 31 1.3
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ... 31 1.3
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ... 31 1.3
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 29 4.1
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 5.4
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 7.1
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 7.1
AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm rece... 28 9.4
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 141 bits (341), Expect = 6e-34
Identities = 69/86 (80%), Positives = 76/86 (88%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
IKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85 IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR 513
ATAIRGAI+ AKL+V+PVRRGYWG +
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169
Score = 130 bits (314), Expect = 1e-30
Identities = 60/87 (68%), Positives = 65/87 (74%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAHRGNGIVSAPVPKKLLQMAGVQDCYTSARGST 683
G KIG PHTVPCKVTGKC SV VRLIPA RG GIVSAPVPKKLL MAG++DCYT+A+GST
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226
Query: 684 GTLGNFXXXXXXXXXXXXXXLTPDLWR 764
TLGNF LTPDLW+
Sbjct: 227 ATLGNFAKATYAALQRTYSYLTPDLWK 253
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = +2
Query: 158 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
E + EW PVTKLGRLV+E KI LE IYL SL K
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86
>AC006791-4|AAM97974.1| 603|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform b protein.
Length = 603
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 631 SFLGTGADTIPLPRWAGISRTVTEPHLPVTLQGTVCGFPILYPSNLFELVK 479
S+ TGA+ PR+A SR V +L + V F L+ S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-3|ABM01864.1| 906|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform c protein.
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 631 SFLGTGADTIPLPRWAGISRTVTEPHLPVTLQGTVCGFPILYPSNLFELVK 479
S+ TGA+ PR+A SR V +L + V F L+ S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform a protein.
Length = 1042
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 631 SFLGTGADTIPLPRWAGISRTVTEPHLPVTLQGTVCGFPILYPSNLFELVK 479
S+ TGA+ PR+A SR V +L + V F L+ S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
glutamate receptorfamily protein 3, isoform d protein.
Length = 1044
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 631 SFLGTGADTIPLPRWAGISRTVTEPHLPVTLQGTVCGFPILYPSNLFELVK 479
S+ TGA+ PR+A SR V +L + V F L+ S+ E+V+
Sbjct: 173 SYSSTGAELSEKPRFAFFSRVVPPDNLQAQVMARVVCFSSLFKSSWHEIVQ 223
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 486 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLIPAHRGNGIVSAPVPKKLLQMAGVQDCYT 665
+S++L ++ + T+ +C + V RG G+ P K+ + G++D Y
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252
Query: 666 SARGST 683
GST
Sbjct: 253 KVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 486 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLIPAHRGNGIVSAPVPKKLLQMAGVQDCYT 665
+S++L ++ + T+ +C + V RG G+ P K+ + G++D Y
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252
Query: 666 SARGST 683
GST
Sbjct: 253 KVEGST 258
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 501 LGYKIGKPHTVPCKVTGKCGSVTVRLIPAHRGNGIVSAPVPKKLL 635
+G +G +PC TG G ++ AHRG G A VP K L
Sbjct: 231 IGTDVGGSVRIPCHFTGTAGIKPSKMRFAHRGGG---ASVPGKPL 272
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 498 TSSNW*NRQLSKDNSASNGSG 436
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 455
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 455
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF067948-6|AAC17701.1| 337|Caenorhabditis elegans Seven tm
receptor protein 30 protein.
Length = 337
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 625 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 759
R FF+ L+Y+ +P + P ++L L ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,502,009
Number of Sequences: 27780
Number of extensions: 439596
Number of successful extensions: 1275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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