Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30440
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   112   2e-26
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   112   2e-26
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.017
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   3.3  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.8  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   5.8  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   7.7  
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  112 bits (270), Expect = 2e-26
 Identities = 55/87 (63%), Positives = 63/87 (72%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRG 182
           +E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VS RG
Sbjct: 9   SERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRG 65

Query: 183 RILTGVVQKMKMQRTIVIRRDYLHTYP 263
           RILTG V   KM RTI+IRR+YLH  P
Sbjct: 66  RILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 34/50 (68%), Positives = 45/50 (90%)
 Frame = +2

Query: 257 LPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           +PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 91  IPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  112 bits (270), Expect = 2e-26
 Identities = 55/87 (63%), Positives = 63/87 (72%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRG 182
           +E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VS RG
Sbjct: 9   SERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRG 65

Query: 183 RILTGVVQKMKMQRTIVIRRDYLHTYP 263
           RILTG V   KM RTI+IRR+YLH  P
Sbjct: 66  RILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 34/50 (68%), Positives = 45/50 (90%)
 Frame = +2

Query: 257 LPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           +PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 91  IPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 335 IGDIVTIGECRPLSKTVRFNVLKV 406
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 212 EDAENYRDPPRLPSHLP 262
           E AE + DPP +PS LP
Sbjct: 20  EIAEKHPDPPAMPSRLP 36


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 132 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 34
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 329 VEIGDIVTIGECRPLSKTVRFNVL 400
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 132 TYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTI-VIRRDYLHTY 260
           T I  KCPF  ++S  G+     +     QR    +R  +L  Y
Sbjct: 36  TSIHDKCPFKQHISENGQNFGSAISSNISQRNFKTLRASHLSQY 79


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 254 VKVIAADHDSSLHLHFLNDAGEDAAAXRNVTSEGTL 147
           V   +  HDS+LH +FLN   +D       T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,583
Number of Sequences: 5004
Number of extensions: 35698
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)