Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30440
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 115 2e-26
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 115 2e-26
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 113 5e-26
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 112 2e-25
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 110 5e-25
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 101 2e-22
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 33 0.15
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.27
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 31 0.62
08_02_0383 - 16539472-16539633,16543044-16543205 30 0.82
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.4
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 28 4.4
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 7.6
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 115 bits (276), Expect = 2e-26
Identities = 60/106 (56%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
Frame = +3
Query: 3 TEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
TEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGT 64
Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLHTYPNTIGSRNGTGICPC 305
VS RGRI+ G KM RTI++RR+YLH R G + PC
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 272 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 115 bits (276), Expect = 2e-26
Identities = 60/106 (56%), Positives = 70/106 (66%), Gaps = 5/106 (4%)
Frame = +3
Query: 3 TEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
TEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGT 64
Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLHTYPNTIGSRNGTGICPC 305
VS RGRI+ G KM RTI++RR+YLH R G + PC
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 272 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 113 bits (273), Expect = 5e-26
Identities = 63/117 (53%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Frame = +3
Query: 3 TEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
TEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGT 64
Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLHTYPNTIGSRNGTGICPCICRLASGTWRL 338
VS RGRI+ G KM RTI++RR+YLH N G C+ R T+RL
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCM-RRGIPTFRL 120
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 112 bits (269), Expect = 2e-25
Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 TEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
TEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 5 TEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGT 64
Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
VS RGRI+ G KM RTI++RR+YLH
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/45 (73%), Positives = 38/45 (84%)
Frame = +2
Query: 272 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 110 bits (265), Expect = 5e-25
Identities = 56/89 (62%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 TEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
TE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 5 TERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGT 64
Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
VS RGRI+ G KM RTI++RR+YLH
Sbjct: 65 VSIRGRIIAGTCHSAKMNRTIIVRRNYLH 93
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +2
Query: 275 FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 108 YEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 101 bits (243), Expect = 2e-22
Identities = 49/82 (59%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Frame = +3
Query: 21 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRI 188
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VS RGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 189 LTGVVQKMKMQRTIVIRRDYLH 254
+ G KM RTI++RR+YLH
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLH 84
Score = 76.2 bits (179), Expect = 1e-14
Identities = 34/48 (70%), Positives = 40/48 (83%)
Frame = +2
Query: 263 KYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 88 KYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 242 RLPSHLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 391
RL H PKY R E+ + H P ++GD+V + RP+SKT F
Sbjct: 991 RLAPH-PKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSRPISKTKHF 1037
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 377 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 270
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 123 IEGTYIDKKCPFTGNVSXRGRILTGVVQKM-KMQRTIVIRRDYLHT 257
+ GT PFTG++S G + + KM + +V +DYLHT
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHT 506
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 254 HLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
H YNR+ KR H D IGD V + RPLSK + V ++
Sbjct: 26 HHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSRPLSKRKHWVVAEI 74
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 143 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 12
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 218 AENYRDPPRLPSHLPKYNRFEKRHRN 295
A NY DP P K+N FE +H N
Sbjct: 734 ASNYADPNSHPEFWNKWNEFEIQHGN 759
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 112 PERRLRVPTLTRSVPSLVTF 171
PERR VP RS+ LVTF
Sbjct: 155 PERRRNVPVAQRSLEGLVTF 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,322,448
Number of Sequences: 37544
Number of extensions: 243979
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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