Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30440
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   9e-29
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.052
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)                 28   4.5  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         27   7.8  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  123 bits (296), Expect = 9e-29
 Identities = 64/100 (64%), Positives = 75/100 (75%), Gaps = 16/100 (16%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEGT 134
           TE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEGT
Sbjct: 5   TERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGT 64

Query: 135 YIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
           YIDKKCPFTGNVS RGRILTG+ + MKM+RTI+IRRDYLH
Sbjct: 65  YIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLH 104



 Score = 94.3 bits (224), Expect = 5e-20
 Identities = 36/51 (70%), Positives = 47/51 (92%)
 Frame = +2

Query: 254 HLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           ++ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 105 YIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 338 GDIVTIGECRPLSKTVRFNVLKV 406
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 141 QCRYPQSPLWEF*SLNQHSYGDACP 67
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 212 EDAENYRDPPRLPSHLPKYNRFEKRHRNM 298
           E  E++R  PR+PSH PK N  E R   M
Sbjct: 137 ESQESHR--PRVPSHGPKQNASENRQATM 163


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 331 HVPEARRQMHGHIPVPFLEP 272
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_50252| Best HMM Match : SAM_1 (HMM E-Value=0.00064)
          Length = 285

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 248 VIAADHDSSLHLHFLNDAGEDAAAXRNVTSEGTLLVNVGT 129
           V+  DH+ ++ + F+ D+G D    R+   E   L  +GT
Sbjct: 184 VLPPDHNQTVQVKFMVDSGSDVTTLRHDVIERLGLPRIGT 223


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 9   KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSXRGR 185
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V+ R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 186 ILTGVVQK 209
              G  Q+
Sbjct: 276 ARAGNAQR 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,321
Number of Sequences: 59808
Number of extensions: 277617
Number of successful extensions: 701
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)