Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30440
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   117   3e-27
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           115   2e-26
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           111   3e-25
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    32   0.17 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.52 
At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    28   2.8  
At4g26980.1 68417.m03882 expressed protein                             28   2.8  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   6.4  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.5  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  117 bits (282), Expect = 3e-27
 Identities = 59/89 (66%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
           TEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFTG 
Sbjct: 5   TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGT 64

Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
           VS RGRIL+G     KMQRTI++RRDYLH
Sbjct: 65  VSIRGRILSGTCHSAKMQRTIIVRRDYLH 93



 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 36/48 (75%), Positives = 41/48 (85%)
 Frame = +2

Query: 263 KYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           KY R+EKRH N+  H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 97  KYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  115 bits (276), Expect = 2e-26
 Identities = 57/89 (64%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
           TEKAF KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFTG 
Sbjct: 5   TEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGT 64

Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
           VS RGRIL G     KMQRTI++RRDYLH
Sbjct: 65  VSIRGRILAGTCHSAKMQRTIIVRRDYLH 93



 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = +2

Query: 263 KYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           KY R+EKRH N+  H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 97  KYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  111 bits (266), Expect = 3e-25
 Identities = 57/89 (64%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   TEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 167
           TEKAF KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFTG 
Sbjct: 5   TEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGT 64

Query: 168 VSXRGRILTGVVQKMKMQRTIVIRRDYLH 254
           VS RGRIL G     KMQRTI++RR+YLH
Sbjct: 65  VSIRGRILAGTCHSAKMQRTIIVRRNYLH 93



 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +2

Query: 263 KYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           KY R+EKRH N+  H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 97  KYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +2

Query: 242 RLPSHLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 406
           RL  H PKY R  +  +    H  P     ++GD+V + + RP+SKT  F  L V
Sbjct: 72  RLAPH-PKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEKSRPISKTKSFVALPV 123


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 36  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 164
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1003

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 308 NARTYSCAVSRTYCIWVGVKV-IAADHDSSLHLHFLNDAG 192
           N+   S  VS ++C W+GV   ++  H +SL L  LN +G
Sbjct: 44  NSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSG 83


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 105 KTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQK 209
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +3

Query: 21  KQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGV 200
           +  T  ++   G  ++D       GL   +P +  EG + ++   F G +S  G   T V
Sbjct: 447 ESGTGLVHTAPGHGQEDYATGLKYGLPLVSPVDD-EGKFTEEAGQFRG-LSVLGEGNTAV 504

Query: 201 VQKMKMQRTIVIRRDYLHTYP 263
           V  +    ++V+   Y H YP
Sbjct: 505 VSYLDENMSLVMEESYAHKYP 525


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 320 SKATNARTYSCAVSRTYCIWVGVKVIAADHDSSLHLHFLNDAG 192
           SK    + YSC +S  +  W  V  +AA H+ S  + ++   G
Sbjct: 96  SKIIEEKRYSCIISSPFTPW--VPAVAASHNISCAILWIQACG 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,862,365
Number of Sequences: 28952
Number of extensions: 194984
Number of successful extensions: 437
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)