Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30439
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 158 6e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 157 1e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 78 1e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 34 0.022
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.1
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 28 1.5
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.9
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 7.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 158 bits (384), Expect = 6e-40
Identities = 75/117 (64%), Positives = 87/117 (74%)
Frame = +2
Query: 254 SFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 433
+FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLV
Sbjct: 201 TFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLV 260
Query: 434 PYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
PYPRIHFPLVTYAP++SA KA+HE P + P A ++A C
Sbjct: 261 PYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDP-RAGRYMATC 316
Score = 116 bits (278), Expect = 4e-27
Identities = 50/83 (60%), Positives = 66/83 (79%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
V D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPAPQV
Sbjct: 118 VTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQV 177
Query: 186 STAVVEPYNSILTTHTTLEHSDC 254
ST+VVEPYNS+LTTH TL+ +DC
Sbjct: 178 STSVVEPYNSVLTTHATLDLADC 200
Score = 110 bits (265), Expect = 2e-25
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +1
Query: 511 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 690
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDW
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 157 bits (382), Expect = 1e-39
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +2
Query: 254 SFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 433
+FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLV
Sbjct: 205 TFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLV 264
Query: 434 PYPRIHFPLVTYAPVISAEKAYHE 505
PYPRIHFPLVTY+P++SA KA+HE
Sbjct: 265 PYPRIHFPLVTYSPIVSAAKAFHE 288
Score = 121 bits (292), Expect = 9e-29
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPAPQV
Sbjct: 122 VLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQV 181
Query: 186 STAVVEPYNSILTTHTTLEHSDC 254
ST+VVEPYNS+LTTH TL++SDC
Sbjct: 182 STSVVEPYNSVLTTHATLDNSDC 204
Score = 108 bits (259), Expect = 9e-25
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +1
Query: 511 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 690
SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDW
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 77.8 bits (183), Expect = 1e-15
Identities = 32/75 (42%), Positives = 50/75 (66%)
Frame = +2
Query: 254 SFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 433
+F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G LN DL + N+V
Sbjct: 199 TFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMV 258
Query: 434 PYPRIHFPLVTYAPV 478
P+PR+HF +V +AP+
Sbjct: 259 PFPRLHFFMVGFAPL 273
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP+
Sbjct: 116 VLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKS 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E+SD
Sbjct: 176 SDTVVEPYNATLSMHQLVENSD 197
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
VSV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P
Sbjct: 204 VLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPS 263
Query: 440 PRIHFPLVTYAP 475
PR HF L +Y P
Sbjct: 264 PRCHFLLTSYTP 275
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ- 182
++D I + AD L+GF + H L+ERL+ Y KK ++++P Q
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 183 VSTAVVEPYNSIL 221
VS VV+PYNS+L
Sbjct: 178 VSDVVVQPYNSLL 190
Score = 34.3 bits (75), Expect = 0.017
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 SVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 688 W 690
W
Sbjct: 351 W 351
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -2
Query: 436 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 275
R + E + H ++ + Q+SSD ++ +D T VG+G AL I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 523 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 648
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 316 ALNVEITAADVIDGFIVDHERQSECSRVVWVVRI 215
+LN+ ++ G D+E Q + + +WV I
Sbjct: 218 SLNINFMGVGIVSGLTADYETQEQITASIWVEHI 251
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 392 ALNVDLTEFQTNLVPYPRIHFPLVT--YAPVISAEKAYHEQFPSPRSQTHASSPPTRW*N 565
A +V++ E +TN +P HFP T AP S EK S + T+ N
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATTEEVAPA-SEEKPATGPAEESTSTQNVEQASTQNDN 426
Query: 566 ATPV 577
TP+
Sbjct: 427 GTPI 430
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 651 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGD 514
S G +LGY ++ A++V+A + V HL+ G D +
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSE 452
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 430 QVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHERQ 251
Q ++ VH ++A E R N + QVG +N ++ D+ + F+ D+E +
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYEDE 660
Query: 250 S 248
+
Sbjct: 661 T 661
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 628 WVRRHHGTAYSKPCTCHDGG 569
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = -3
Query: 588 VLAMTGVAFHHLVGGLEACVCDLGDGNCSW*AFSAEMTGAYVTSGKWIRG*GTKLVW 418
++++ +AF +L+ +E V D D SW F+ + ++ + G T W
Sbjct: 788 LVSILSIAFSYLISRVELIVADGADPVASWKIFAMMVPKSFWKQNHLLFGLQTAQFW 844
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,557
Number of Sequences: 5004
Number of extensions: 61270
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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