Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30439
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 158 4e-39
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 158 4e-39
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 157 5e-39
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 157 5e-39
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 157 5e-39
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 157 5e-39
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 157 9e-39
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 87 1e-17
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 87 1e-17
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 86 2e-17
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 86 2e-17
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 85 4e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 85 6e-17
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 85 6e-17
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 84 7e-17
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 84 7e-17
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 58 4e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 58 6e-09
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.034
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.24
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 31 0.96
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 29 3.9
At1g68080.1 68414.m07777 expressed protein 28 5.1
At5g46400.1 68418.m05711 expressed protein 27 8.9
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 158 bits (383), Expect = 4e-39
Identities = 75/118 (63%), Positives = 90/118 (76%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
+S ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNL
Sbjct: 200 VSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISAEKA+HEQ A P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP-RHGKYMACC 316
Score = 122 bits (293), Expect = 3e-28
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQ
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VST+VVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTD 199
Score = 121 bits (292), Expect = 4e-28
Identities = 51/61 (83%), Positives = 57/61 (93%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVD
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 158 bits (383), Expect = 4e-39
Identities = 75/118 (63%), Positives = 90/118 (76%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
+S ++DNEAIYDICRR+L+IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNL
Sbjct: 200 VSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISAEKA+HEQ A P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP-RHGKYMACC 316
Score = 122 bits (293), Expect = 3e-28
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQ
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VST+VVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTD 199
Score = 121 bits (292), Expect = 4e-28
Identities = 51/61 (83%), Positives = 57/61 (93%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVD
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 157 bits (382), Expect = 5e-39
Identities = 75/118 (63%), Positives = 88/118 (74%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
++ ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNL
Sbjct: 200 VAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISA KAYHEQ P P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP-RHGKYMACC 316
Score = 123 bits (296), Expect = 1e-28
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQ
Sbjct: 117 LCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VSTAVVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTAVVEPYNSVLSTHSLLEHTD 199
Score = 120 bits (288), Expect = 1e-27
Identities = 50/61 (81%), Positives = 56/61 (91%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVD
Sbjct: 286 LSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 157 bits (382), Expect = 5e-39
Identities = 75/118 (63%), Positives = 88/118 (74%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
++ ++DNEAIYDICRR+LDIERPTYTNLNRLI QI+SS+T SLRFDGA+NVD+TEFQTNL
Sbjct: 200 VAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISA KAYHEQ P P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP-RHGKYMACC 316
Score = 123 bits (296), Expect = 1e-28
Identities = 57/83 (68%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQ
Sbjct: 117 LCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VSTAVVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTAVVEPYNSVLSTHSLLEHTD 199
Score = 120 bits (288), Expect = 1e-27
Identities = 50/61 (81%), Positives = 56/61 (91%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVD
Sbjct: 286 LSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (382), Expect = 5e-39
Identities = 75/118 (63%), Positives = 89/118 (75%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
+S ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNL
Sbjct: 200 VSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISAEKA+HEQ A P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP-RHGKYMACC 316
Score = 122 bits (293), Expect = 3e-28
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQ
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VST+VVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTD 199
Score = 121 bits (292), Expect = 4e-28
Identities = 51/61 (83%), Positives = 57/61 (93%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVD
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 157 bits (382), Expect = 5e-39
Identities = 75/118 (63%), Positives = 89/118 (75%)
Frame = +2
Query: 251 LSFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 430
+S ++DNEAIYDICRR+L IERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNL
Sbjct: 200 VSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 259
Query: 431 VPYPRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSPPTRW*NATPVMASTWLAVC 604
VPYPRIHF L +YAPVISAEKA+HEQ A P + P ++A C
Sbjct: 260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP-RHGKYMACC 316
Score = 122 bits (293), Expect = 3e-28
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 182
L LDRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQ
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 176
Query: 183 VSTAVVEPYNSILTTHTTLEHSD 251
VST+VVEPYNS+L+TH+ LEH+D
Sbjct: 177 VSTSVVEPYNSVLSTHSLLEHTD 199
Score = 121 bits (292), Expect = 4e-28
Identities = 51/61 (83%), Positives = 57/61 (93%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVD
Sbjct: 286 LSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVD 345
Query: 688 W 690
W
Sbjct: 346 W 346
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (380), Expect = 9e-39
Identities = 71/96 (73%), Positives = 81/96 (84%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEAIYDICRR+LDIERPTY+NLNRLI Q +SS+T SLRFDGA+NVD+TEFQTNLVPY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPY 262
Query: 440 PRIHFPLVTYAPVISAEKAYHEQFPSPRSQTHASSP 547
PRIHF L +YAPVIS+ KAYHEQF P T P
Sbjct: 263 PRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEP 298
Score = 118 bits (284), Expect = 4e-27
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +3
Query: 9 LDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVS 188
L+R+RKLAD CTGLQGFL+F+ LL+ERLSVD+GKKSKL F IYP+PQVS
Sbjct: 119 LERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVS 178
Query: 189 TAVVEPYNSILTTHTTLEHSD 251
TAVVEPYNS+L+TH+ LEH+D
Sbjct: 179 TAVVEPYNSVLSTHSLLEHTD 199
Score = 113 bits (271), Expect = 1e-25
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = +1
Query: 511 SVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 690
SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK KRTIQFVDW
Sbjct: 287 SVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDW 346
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/75 (49%), Positives = 53/75 (70%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G LN DL + NL+P+
Sbjct: 202 VLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPF 261
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 262 PRLHFFMVGFAPLTS 276
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 117 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 177 SDTVVEPYNATLSVHQLVENAD 198
Score = 53.6 bits (123), Expect = 1e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Frame = +1
Query: 505 TVSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 684
+++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K + FV
Sbjct: 284 SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFV 343
Query: 685 DW 690
+W
Sbjct: 344 EW 345
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 86.6 bits (205), Expect = 1e-17
Identities = 37/75 (49%), Positives = 53/75 (70%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T SLRF G LN DL + NL+P+
Sbjct: 202 VLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPF 261
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 262 PRLHFFMVGFAPLTS 276
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 117 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 177 SDTVVEPYNATLSVHQLVENAD 198
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +1
Query: 505 TVSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 684
+++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K + FV
Sbjct: 284 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFV 343
Query: 685 DW 690
+W
Sbjct: 344 EW 345
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 261 PRLHFFMVGFAPLTS 275
Score = 64.1 bits (149), Expect = 8e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ LQGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 116 VLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K + FV+
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + PT+ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 261 PRLHFFMVGFAPLTS 275
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
+SV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+
Sbjct: 284 LSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.0 bits (201), Expect = 4e-17
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVISAEKAYHEQFPSP 520
PR+HF +V +AP+ S + P
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRNLTVP 287
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 84.6 bits (200), Expect = 6e-17
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVISAEKAYHEQFPSP 520
PR+HF +V +AP+ S + P
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.4 bits (120), Expect = 3e-07
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 505 TVSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 684
+++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV
Sbjct: 283 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFV 342
Query: 685 DW 690
+W
Sbjct: 343 EW 344
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 84.6 bits (200), Expect = 6e-17
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVISAEKAYHEQFPSP 520
PR+HF +V +AP+ S + P
Sbjct: 261 PRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.4 bits (120), Expect = 3e-07
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 505 TVSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFV 684
+++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV
Sbjct: 283 SLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFV 342
Query: 685 DW 690
+W
Sbjct: 343 EW 344
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 261 PRLHFFMVGFAPLTS 275
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+
Sbjct: 284 LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DNEA+YDIC R L + P++ +LN LI +S +T LRF G LN DL + NL+P+
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPF 260
Query: 440 PRIHFPLVTYAPVIS 484
PR+HF +V +AP+ S
Sbjct: 261 PRLHFFMVGFAPLTS 275
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 185
VLD +RK A+ C LQGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 116 VLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
Query: 186 STAVVEPYNSILTTHTTLEHSD 251
S VVEPYN+ L+ H +E++D
Sbjct: 176 SDTVVEPYNATLSVHQLVENAD 197
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +1
Query: 508 VSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 687
++V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+
Sbjct: 284 LTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVE 343
Query: 688 W 690
W
Sbjct: 344 W 344
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +N DL +L+P
Sbjct: 204 VLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPT 263
Query: 440 PRIHFPLVTYAPVISAEKA 496
PR HF + Y P+ +A
Sbjct: 264 PRCHFLMTGYTPLTVERQA 282
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQ 182
++D I + AD L+GF++ H L+E L+ Y KK ++++P +
Sbjct: 118 IMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQME 177
Query: 183 VSTAVVEPYNSILTTHTTLEHSDCL 257
S VV+PYNS+LT ++DC+
Sbjct: 178 TSDVVVQPYNSLLTLKRLTLNADCV 202
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 583 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 690
KY++ + +G+V P V+ ++ I+ ++ + F+DW
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDW 353
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +2
Query: 260 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPY 439
++DN A+ I L + PT+ N L+ ++S+ T +LR+ G +N DL +L+P
Sbjct: 204 VLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPT 263
Query: 440 PRIHFPLVTYAPVISAEKA 496
PR HF + Y P+ +A
Sbjct: 264 PRCHFLMTGYTPLTVERQA 282
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYP-APQ 182
++D I + AD L+GF++ H L+E L+ Y KK ++++P +
Sbjct: 118 IMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQME 177
Query: 183 VSTAVVEPYNSILTTHTTLEHSDCL 257
S VV+PYNS+LT ++DC+
Sbjct: 178 TSDVVVQPYNSLLTLKRLTLNADCV 202
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = +1
Query: 583 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDW 690
KY++ + +G+V P V+ ++ I+ ++ + F++W
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEW 353
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 361 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 495
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 645 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 538
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 465 RTRQSSLPRRPTMNSFRRRDHKRMLRARQPDGEMRPPSWQV 587
+T+ + L R P+MNS RR H R G + PP+ Q+
Sbjct: 1161 QTQANRLSRGPSMNSSGRRGHMEFSSPRGGGGMLSPPAAQM 1201
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 207 YNSILTTHTTLEHSDCLSWSTMKPSMTS 290
Y+S+L T T SDC W +K + TS
Sbjct: 37 YDSVLPTWTNDTKSDCCQWENIKCNRTS 64
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 684 DELDSTLGFDGSDGRVHILGYDVTTVQ 604
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At5g46400.1 68418.m05711 expressed protein
Length = 1036
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 447 STSHWSRTRQSSLPRRPTMNSFRRRDHKRMLRARQPDGEMRPP 575
S S S Q SL R+ N + RRD +M R +P + RPP
Sbjct: 717 SQSPQSYQSQESL-RQTGRNRYHRRDLNQMHRDSKPRSQERPP 758
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,777
Number of Sequences: 28952
Number of extensions: 358248
Number of successful extensions: 1110
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -