Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30438
(511 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosom... 116 1e-26
AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p pro... 116 1e-26
AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA ... 116 1e-26
Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein ( Dros... 110 1e-24
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ... 29 3.7
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl... 29 4.8
AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein ... 28 8.4
AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein ... 28 8.4
>S62170-1|AAB26902.1| 112|Drosophila melanogaster acidic ribosomal
protein rpA2 protein.
Length = 112
Score = 116 bits (280), Expect = 1e-26
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +3
Query: 66 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 245
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 246 TNI 254
TNI
Sbjct: 61 TNI 63
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY069125-1|AAL39270.1| 112|Drosophila melanogaster GH13422p
protein.
Length = 112
Score = 116 bits (280), Expect = 1e-26
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +3
Query: 66 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 245
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 246 TNI 254
TNI
Sbjct: 61 TNI 63
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AE014134-102|AAF51499.1| 112|Drosophila melanogaster CG4087-PA
protein.
Length = 112
Score = 116 bits (280), Expect = 1e-26
Identities = 55/63 (87%), Positives = 61/63 (96%)
Frame = +3
Query: 66 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 245
M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLI
Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLI 60
Query: 246 TNI 254
TNI
Sbjct: 61 TNI 63
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>Y00504-1|CAA68557.1| 112|Drosophila melanogaster protein (
Drosophila melanogastermRNA for A-type ribosomal protein
rp21C. ).
Length = 112
Score = 110 bits (264), Expect = 1e-24
Identities = 53/63 (84%), Positives = 59/63 (93%)
Frame = +3
Query: 66 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 245
M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLI
Sbjct: 1 MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLI 60
Query: 246 TNI 254
TNI
Sbjct: 61 TNI 63
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 368 SDDDMGFGLFD 400
SDDDMGFGLFD
Sbjct: 102 SDDDMGFGLFD 112
>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 247 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI 146
+I S+ L+P+K N P QY T+ A K +I
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKI 288
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 238 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 110
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
single-stranded nucleicacid binding protein protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 238 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 110
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 410 SQNFIPAKTHINIPTQYNDTNATKALKTAKAASPSHTYSRQTK 452
>AY561850-1|AAS68533.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 238 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 110
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
>AJ566116-1|CAD92792.1| 970|Drosophila melanogaster gag protein
protein.
Length = 970
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 238 SRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 110
S+ +P+K N P QY T+ A K + SP S T+
Sbjct: 333 SQNFIPAKTHINIPTQYNDTNATKALKTAKPASPSHTYSRQTK 375
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,247,490
Number of Sequences: 53049
Number of extensions: 311785
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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