Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30437
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.2  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   2.9  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    27   3.8  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   5.0  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   5.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.7  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.8  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   8.8  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   8.8  

>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 678 KGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCFFVSNTCSPHIWSLFYL 526
           + F+ LL I+     +S L   L   S   F+PC    +T    +W LF+L
Sbjct: 175 QSFISLLQILPEPFLKSQLSHTLPVGSKYFFVPCDKKHHTLGLLLWKLFFL 225


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 137 VLLCFFGLDVNLENIDAGFRRRRHNCDHGENRHNT 33
           +L+ F GL VNL  I A      HN DHG + H++
Sbjct: 454 LLVSFLGLVVNLVGILAF--NHGHNHDHGSHHHHS 486


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  QLCLRRRNPASMFSKLTSSPKKHRS 135
           QL LRR+  A+  SKL+SS   H S
Sbjct: 741 QLLLRRKQGATCLSKLSSSSSSHTS 765


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 370 SLVSVGI-CT*TVLSVVLGRVVYFFNVVLSILDFLSVLPVCPRVGPASTVRNLGSLYLIN 194
           S  +VGI  T   L +  G+     NV LS+L + +     PRVGP+   R      +  
Sbjct: 4   SCFNVGIWATGLALLMNQGQSPLLSNVGLSVLAYKATAMFIPRVGPSFIKRGFSGKDMNK 63

Query: 193 GKTAVRPAN*GSVNGGLFKYFC 128
            +  V P   G+V+  L  + C
Sbjct: 64  VEKYVIPETMGAVS-ALVYFMC 84


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 279 RILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 416
           R++  + +K++  P T DKT    +P D +  N+    I+S P TS
Sbjct: 21  RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 90  IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 194
           ID+  +D  P   E AQKY+ + PFT P  A     LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 275 FPFRSSSVSKSGACFDCTKPRVVVFNQW*DSGAAS*LRICE 153
           FP++S ++ KS     C  P  + FN W   G      +C+
Sbjct: 285 FPWKSCTILKSKPVSLCVYPEKITFN-WLTEGTVDSCNLCK 324


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 640 LPKDYYQQTYKALPSDYYQPQAS 708
           +PK Y  + Y  +PS  Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 639 SFESVLRVGLLCSS-GSS--FLPCFFVSNTCSPHIWSLFYLFQLDLSKLSSWWK 487
           S + V+++  + +  G S  F+   F  +TCS  + +  Y FQ     LSSW K
Sbjct: 314 SIDPVIQIASIVTQYGDSTPFVRNVFCVDTCSQIVGTQVYEFQNQAEMLSSWSK 367


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +3

Query: 135 YLNSPPFTD-PQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHTGRTERKSRILRTTLKKYT 311
           ++ S P TD P+L+    ++     NDP+    E     G     E  S +++       
Sbjct: 343 FVASKPVTDTPELSKENTLVSSENLNDPKPNLPETEVDFGEPLEVEAPSFVVQNNSAVQP 402

Query: 312 TRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 416
           T   T++ +  +H      +PN+ +   + + E +
Sbjct: 403 TTQKTSEDSTDLH---TNEIPNVAQPPSSFEKENN 434


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 272 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 385
           E+  +ED V  V    + + ++ L  G YAYGY+TP + +
Sbjct: 10  ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 717 LLFGCLWLVIITWKGFVGLLVI 652
           LLFGCL +V   +  F+GL  +
Sbjct: 49  LLFGCLTIVFSAFASFLGLYFV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,532
Number of Sequences: 5004
Number of extensions: 60014
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)