Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30437
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841... 29 3.0
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 29 3.0
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 3.0
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505... 29 4.0
12_02_0674 - 21745321-21746223,21746229-21747608 28 7.0
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 28 7.0
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 28 7.0
08_02_0312 + 15650594-15650652,15650725-15650811,15651016-156511... 28 9.2
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 28 9.2
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 28 9.2
04_04_1123 + 31068959-31069184,31069795-31069951,31072099-310723... 28 9.2
>04_04_1478 -
33882625-33883639,33883725-33883849,33883935-33884144,
33884645-33884650
Length = 451
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Frame = +3
Query: 96 VFQIDIEPEEAQKYLNS-PPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHTGRTER 272
+F+I +P + Q+ + P Q A + V PL+ P+ P H G
Sbjct: 225 LFKILSDPSQLQRLMKECGPVRHEQSASSSVVAPLVSIPPPQITASSPAPFSDHVGTFHG 284
Query: 273 KSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 416
+ L P+T H P+ + N + +S P +
Sbjct: 285 MNPTLPPPPPMMNRPPSTIPSVAMNHPPSSSPAMNFGSALPSSSPSVN 332
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 245 SWTHWKNGKEIENTEDYVEEVYDAS 319
SW W+ K+I ++YV+ YD S
Sbjct: 1014 SWKQWRRRKKIHRLQEYVKSEYDHS 1038
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 395 RVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFH 493
+V GD TG+ + G NDL+ +R+ D + H
Sbjct: 851 QVLDGDSTGNLVVPIGMNDLINLRHLIDHEEVH 883
>07_01_0675 +
5055842-5055950,5056036-5056193,5056276-5057067,
5057544-5057760,5058280-5058449,5058986-5059630
Length = 696
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 386 VENRVRSGDVTGSYIYKDGKNDLVKVRY 469
V N V S +TG Y+Y+ G + + RY
Sbjct: 537 VNNNVGSASITGGYVYRSGTDPCLAGRY 564
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 7.0
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 255 TGRTERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRR--SKIASDPETSPARI 428
T T S + +T+K TT T +PT TR +L SKI + P TS +
Sbjct: 604 TSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTRAGDLSTATSKIPTAPGTS--EL 661
Query: 429 STRTAKMISSRYVTGQTVT 485
ST T+K ISS GQ T
Sbjct: 662 STTTSK-ISSTSCAGQFST 679
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +3
Query: 330 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 509
+K V+ TR+ + ++ DP T P R R + QTV S TY
Sbjct: 653 EKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTY 712
Query: 510 *GRAETSRR 536
G E +R
Sbjct: 713 VGAREQIKR 721
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 93 DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 239
D I I A NS PFT +P+ + V+PL KYN + V G
Sbjct: 243 DSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLG 294
>08_02_0312 +
15650594-15650652,15650725-15650811,15651016-15651142,
15651533-15651712,15652071-15652231,15652338-15652450,
15652648-15652722,15652823-15652936,15653177-15653244,
15653336-15653419,15653545-15653598,15653844-15653937,
15654093-15654166,15654248-15654358,15654443-15654487,
15654572-15654628,15654711-15654815,15654889-15655005,
15655301-15655404,15655876-15656041,15656149-15656286
Length = 710
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 631 LKALPKDYYQQTYKALPSDYYQPQASEQQASVVAHLIASP 750
LK P+D Y + K ++ Y S+QQ AH A P
Sbjct: 69 LKMTPRDNYNKHKKKTDTESYPKTDSDQQRHKKAHCAAPP 108
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -3
Query: 696 LVIITWKGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCFFVSNTCSPHIWSLFYLFQL 517
++ IT KGF V+ ++LR+G + G L F+ C +LF L
Sbjct: 572 MIAITGKGFFKASVLATGLIMNNILRIGKVNVIGDVIL---FLGKLCVSLFCALFAFLML 628
Query: 516 DLSKLSS 496
D K S
Sbjct: 629 DTHKYKS 635
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -3
Query: 696 LVIITWKGFVGLLVIILRKSFESVLRVGLLCSSGSSFLPCFFVSNTCSPHIWSLFYLFQL 517
++ IT KGF V+ ++LR+G + G L F+ C +LF L
Sbjct: 572 MIAITGKGFFKASVLATGLIMNNILRIGKVNVIGDVIL---FLGKLCVSLFCALFAFLML 628
Query: 516 DLSKLSS 496
D K S
Sbjct: 629 DTHKYKS 635
>04_04_1123 +
31068959-31069184,31069795-31069951,31072099-31072319,
31072405-31072525,31072616-31072713,31072904-31073025,
31073199-31073311,31073470-31073565,31073655-31073870,
31073972-31074113,31074208-31074453,31074732-31075040
Length = 688
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 531 YLFQLDLSKLSSWWKPSRSDQ 469
++FQ +L +L+SW K SR DQ
Sbjct: 374 FIFQEELQQLNSWVKESRLDQ 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,995,984
Number of Sequences: 37544
Number of extensions: 418411
Number of successful extensions: 1270
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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