Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30437
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 33 0.19
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 32 0.44
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_50825| Best HMM Match : DUF1168 (HMM E-Value=4.1) 31 1.3
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18215| Best HMM Match : DUF1168 (HMM E-Value=3.7) 30 1.8
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 30 1.8
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 30 2.3
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 29 4.1
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 4.1
SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24) 29 5.4
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 28 7.1
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 7.1
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 7.1
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 9.4
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 33.5 bits (73), Expect = 0.19
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Frame = +3
Query: 78 PKPGIDVFQIDI-EPEEAQKYLNSPP-----FTDPQLAGRTAVLPLIKYNDPRFRTVEAG 239
P +D + D+ E EE +K + S P F D + PL + D + E
Sbjct: 531 PHKPVDFTEGDVSELEEGEKQIPSQPTGVPVFEDVVASSEDKDEPLPDFEDVKEPEEEFQ 590
Query: 240 PTLGHTGRTERKSRILRT-TLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 410
+ GR ++ + RT T K TTR T+D+ MPT+ L + K PE
Sbjct: 591 EFVDEEGRVVKRRIVRRTVTTKTLTTRTVTSDQAGPEEMPTEEVLESAEPVKGTEVPE 648
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 32.3 bits (70), Expect = 0.44
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Frame = +3
Query: 78 PKPGIDVFQIDI-EPEEAQK-----YLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAG 239
P +D + D+ EPEE +K P D + R PL + D + E
Sbjct: 2538 PHKPVDFTEGDVSEPEEGEKKTPPKQTGVPVSEDVVASSRDRTEPLPDFEDVKEPEEEFE 2597
Query: 240 PTLGHTGRTERKSRILRT-TLKKYTTRPNTTDKTV*VHMPTD 362
+ GR ++ + RT T K TTR T+D+ MPT+
Sbjct: 2598 EFVDEEGRVVKRRIVRRTVTTKTLTTRTVTSDQAGPEEMPTE 2639
Score = 31.5 bits (68), Expect = 0.76
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Frame = +3
Query: 114 EPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHTGRTERKSRILRT 293
E + K P D + R PL + D + E + GR R+ + RT
Sbjct: 2018 EKQTPPKQTGVPVSEDVVASSRDRTEPLPDFEDVKEPEEEFEEFVDEEGRVVRRRIVRRT 2077
Query: 294 -TLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 410
T K TTR T+D+ MPT L + K PE
Sbjct: 2078 VTTKTLTTRTVTSDQAGPEEMPTKEVLESAEPVKGTEVPE 2117
>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 363 TRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY*GRAETSRRGS 542
TR+ LRRS A + +R S+ ++ R ++ V VS +T RAE R
Sbjct: 497 TRMQELRRSSSARSARRASSRASSAKSQRRLERAMSAGAVRVSRPRTAQSDRAEEPREEP 556
Query: 543 RCE 551
R E
Sbjct: 557 RLE 559
>SB_50825| Best HMM Match : DUF1168 (HMM E-Value=4.1)
Length = 543
Score = 30.7 bits (66), Expect = 1.3
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Frame = +3
Query: 78 PKPGIDVFQIDI-EPEEAQKYL-----NSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAG 239
P +D + D+ EPEE +K P D + R PL + D + E
Sbjct: 57 PHKPVDFTEGDVSEPEEEEKQTPPKQTGVPVSEDVVASSRDRTEPLPDFEDVKEPEEEFE 116
Query: 240 PTLGHTGRTERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPE 410
+ GR R+ T K TTR T+D+ MPT+ + K PE
Sbjct: 117 EFVDEEGRVVRRIVRRTVTTKTVTTRTVTSDQAGPEEMPTEEAFLSAEPVKGTEVPE 173
>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 284 TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENR 397
TE + + S YHGQDGLG A G + P+ ++++
Sbjct: 151 TEGLTGDFVELSAYHGQDGLGD-AQGLREPDRTPLKDK 187
>SB_18215| Best HMM Match : DUF1168 (HMM E-Value=3.7)
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Frame = +3
Query: 78 PKPGIDVFQIDI-EPEEAQKYL-----NSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAG 239
P +D + D+ EPEE +K P D + R PL + D + E
Sbjct: 30 PHKPVDFTEGDVSEPEEGEKQTPPKQTGVPVSEDVVASSRDRTEPLPDFEDVKEPGEEFE 89
Query: 240 PTLGHTGRTERKSRILRTTLKKYTTRPNTTDKTV*VHMPTD 362
+ GR R+ T K TTR T+D+ MPT+
Sbjct: 90 EFVDEEGRVVRRIVRRTVTTKTVTTRTVTSDQAGPEEMPTE 130
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 354 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVT 485
PT T L+ ++ +S P TSPA T T + + +T TVT
Sbjct: 773 PTATTTSTLQTTEPSSTPSTSPALTVTMTTVIATDSSITPTTVT 816
>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 315 RPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISS 458
RP+ T T H P D R P + D +TS R S+ + + S
Sbjct: 544 RPSQTPPTSLKHFPGDERTPPTSLKHVPGDEQTSQVRFSSEPSSTLRS 591
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/114 (23%), Positives = 43/114 (37%)
Frame = +3
Query: 219 FRTVEAGPTLGHTGRTERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIA 398
F + PT T +T + + T K T RP T+ T+ + T++ +K
Sbjct: 228 FSSTTVAPTTTETPKTTKAPKTPITIPKITTNRPQTS--TITAKITTESTTATQATTKTK 285
Query: 399 SDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY*GRAETSRRGSRCEGCT 560
P+ T S+ T +T KT A T+++ S EG T
Sbjct: 286 EYTTIKPSTTEESTTNEASTAEFESTTAAQATTKT----EAYTTKKPSTTEGST 335
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 29.1 bits (62), Expect = 4.1
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 8/138 (5%)
Frame = +3
Query: 114 EPEEAQKYLNSPPFTDPQLAGRTAVLP-LIKYNDPRFRTVEAGPTLGHTGR-------TE 269
+P + Y P T P P IK + + T + T HT + T
Sbjct: 25 KPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTKPHTTKPRTTKPQTT 84
Query: 270 RKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKM 449
+ T+K YTT+P TT + P T+ P + + T P T K
Sbjct: 85 KPHTTKPHTIKLYTTKPKTTKPH--TNKPYTTK-PRTTKPRTTKPHTTKPCTTKPHTTKP 141
Query: 450 ISSRYVTGQTVTVSTRKT 503
+++ T + T R T
Sbjct: 142 PTTKPQTTKPHTTKPRTT 159
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +3
Query: 216 RFRTVEAGPTLGHTGRTERKSRILRTTLKKYTTRPNTT----DKTV*VHMPTDTRLPNLR 383
+F V+ PT T T + TT+ YTT +TT T+ ++ T T +
Sbjct: 371 KFECVQVPPT-DFTTITTITNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTTIT 429
Query: 384 RSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTT 506
+ T +T IS+ Y T T+T++T TT
Sbjct: 430 TNYTTIVTITITTNYTTIVTITISTNYTTIVTITITTNYTT 470
>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
Length = 563
Score = 28.7 bits (61), Expect = 5.4
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Frame = +3
Query: 297 LKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTA-------KMIS 455
L +TT P+++ H+ T T PN RSK +++P+R STR + ++
Sbjct: 437 LASFTTMPHSSAS---FHI-TSTPFPNGYRSKTRCGAQSAPSRCSTRVSGVKLTFGNLLD 492
Query: 456 SRYVTGQTVTVSTRKTTY*GRAETSRRGSRCEGCTYCSRK 575
+ + VT + + Y G S S+ G T R+
Sbjct: 493 TEVHYNKEVTSYSLRQAYGGHLLASNLLSKSSGATEQERQ 532
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +3
Query: 291 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 470
T + K T P TT P T LP KI + PET+ +T + S T
Sbjct: 2896 TAVPKTTAAPETTPLPKTTAAPETTTLP-----KITAAPETTAVPKTTAAPETTSVPKTT 2950
Query: 471 GQTVTVSTRKTT 506
T S KTT
Sbjct: 2951 AAPETTSVPKTT 2962
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = +3
Query: 291 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRS-------KIASDPETSPARISTRTAKM 449
TTL K T P TT P T +P + K + PET+P +T +
Sbjct: 2860 TTLPKTTAAPETTSVPKTTAAPGTTSVPKTTAAPETTAVPKTTAAPETTPLPKTTAAPET 2919
Query: 450 ISSRYVTGQTVTVSTRKTT 506
+ +T T + KTT
Sbjct: 2920 TTLPKITAAPETTAVPKTT 2938
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -3
Query: 459 LTRSFLPSL*IYEPVTSPDLTRFSTF----ADSGVWYP*AYAPRPSCPWYWD 316
L R+FLP +Y + +PDLT+ T D + Y + C WYWD
Sbjct: 1550 LRRTFLPYQGLYYVLITPDLTKQQTLLWRSGDLNISYGLGFY-ESGC-WYWD 1599
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 291 TTLKKYTTRPNTTDKTV*VHMP-TDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 467
T + T P TTD P T T L +K PET+PA +T + ++
Sbjct: 217 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 276
Query: 468 TGQTVTVSTRKTT 506
T T +++TT
Sbjct: 277 TVAPETTVSQETT 289
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 206 QRPEVSYS-RSRPH-SWTHWKNGKEIENTEDYVEEVYDASQYH 328
Q EVSY R RP + T WKNGKE+ + + E+ YH
Sbjct: 1524 QPVEVSYHVRGRPKPTVTWWKNGKELRDGKHV--EIRSGGTYH 1564
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 291 TTLKKYTTRPNTTDKTV*VHMP-TDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 467
T + T P TTD P T T L +K PET+PA +T + ++
Sbjct: 2279 TAAPETTVAPETTDAPATTLAPKTTTALETTVEAKTTVVPETTPALETTSAPESTAATES 2338
Query: 468 TGQTVTVSTRKTT 506
T T +++TT
Sbjct: 2339 TVAPETTVSQETT 2351
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 294 TLKKYTTRPNTTDK--TV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYV 467
T ++ TT+P TT + T+ ++T+ P +R++ A+ T PA T K ++
Sbjct: 1420 TREEATTKPTTTTRKTTIPTTTASETKPPTIRKTTTAT--TTVPATKPPTTRKTTTATTT 1477
Query: 468 TGQTVTVSTRKTT 506
G+T TRK T
Sbjct: 1478 QGRT----TRKPT 1486
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 345 VH-MPTDTRLPNLRRSKIAS-DPETSPARISTRTAKMISSRYVTGQTVTVSTRKTT 506
VH +P+ +R P+L + ++ P T+ I R+ + SR GQ T+ST KTT
Sbjct: 1701 VHSIPSPSR-PSLNIAPSSTLTPSTAGHTIDIRSTNRVHSRAQEGQIPTLSTLKTT 1755
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,930,190
Number of Sequences: 59808
Number of extensions: 492935
Number of successful extensions: 1608
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -