Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30437
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    37   0.013
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    32   0.51 
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    30   1.5  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    29   3.6  
Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    28   8.2  
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    28   8.2  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 21/72 (29%), Positives = 29/72 (40%)
 Frame = +3

Query: 291 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVT 470
           TT    TT P TT        PT T     + +   + P T+P   +T T    +++   
Sbjct: 238 TTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTK 297

Query: 471 GQTVTVSTRKTT 506
             T T  T KTT
Sbjct: 298 STTTTTKTTKTT 309


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 270 RKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKM 449
           +KS ++ TT KK +       K +   +P+            AS P+TSPA+ +T T  +
Sbjct: 21  KKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPKTSPAKTTTTTTTV 77

Query: 450 ISSRYVTGQTVTVST 494
           ++ +     T  +ST
Sbjct: 78  VTQKVSNQPTAPIST 92


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = +3

Query: 255 TGRTERKSRILRTTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIST 434
           T  T  ++    TT +  TTRP TT KT      T TRL   RR  I   P   P  I  
Sbjct: 364 TTTTRPQTTKTTTTPQTTTTRPQTT-KTTTTPQTTTTRLQTTRRPPIRVTPRL-PTVIPE 421

Query: 435 RTAKMIS 455
            T ++++
Sbjct: 422 DTVELVT 428



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 291 TTLKKYTTRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETSPARIST 434
           TTL+  TTRP TT KT      T TR P  + +K  + P+T+  R+ T
Sbjct: 360 TTLQTTTTRPQTT-KTTTTPQTTTTR-P--QTTKTTTTPQTTTTRLQT 403


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +2

Query: 263 NGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVRSGDVTGSYIY 433
           N  +  N  +Y+++  D  Q +   G +  Y + ++ +PE++K +EN +           
Sbjct: 313 NAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI----------- 361

Query: 434 KDGKNDLVKVRYWSDRD 484
           K   NDLVKV+ W ++D
Sbjct: 362 KQLVNDLVKVKLWGEQD 378


>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 708 GCLWLVIITWKGFVGLLVII 649
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 708 GCLWLVIITWKGFVGLLVII 649
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 708 GCLWLVIITWKGFVGLLVII 649
           GC+W V+I W G+  +LV I
Sbjct: 153 GCMWTVMIAWIGYNCVLVTI 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,719
Number of Sequences: 27780
Number of extensions: 346347
Number of successful extensions: 1093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)