Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30437
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.1  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 224 YSRSRPHSWTH-WKNGKE---IENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVE 391
           YSR R  + TH + N  +    +   DY  E     +Y+G   +  + Y Y+   + +  
Sbjct: 221 YSRVRNLNRTHGFPNDAQPYIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAFRGN 280

Query: 392 NRVR 403
           N ++
Sbjct: 281 NNLK 284


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 362 IRRHMHLDRLVRGIG 318
           + RH H+ RLV  IG
Sbjct: 107 VERHKHIVRLVTAIG 121


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 224 YSRSRPHSWTHWKNGKEIENTEDYVEE 304
           YSRSR      +KN KE     +  +E
Sbjct: 39  YSRSREREQNSYKNEKEYRKYRERSKE 65


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 224 YSRSRPHSWTHWKNGKEIENTEDYVEE 304
           YSRSR      +KN KE     +  +E
Sbjct: 39  YSRSREREQNSYKNEKEYRKYRERSKE 65


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 224 YSRSRPHSWTHWKNGKEIENTEDYVEE 304
           YSRSR      +KN KE     +  +E
Sbjct: 39  YSRSREREQNSYKNEKEYRKYRETSKE 65


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 81  SATQTQLRPRREQTQYVAC 25
           + TQ Q+R  ++ TQ ++C
Sbjct: 611 NCTQYQIRDHKDVTQCISC 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,775
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)