Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30437
(755 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11490.1 68417.m01847 protein kinase family protein contains ... 30 1.9
At5g42120.1 68418.m05128 lectin protein kinase family protein co... 29 2.5
At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta... 29 4.4
At5g18660.1 68418.m02215 isoflavone reductase-related low simila... 29 4.4
At4g11530.1 68417.m01850 protein kinase family protein contains ... 29 4.4
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 28 5.8
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide... 28 5.8
At4g34690.1 68417.m04924 hypothetical protein 28 5.8
At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplas... 28 7.7
At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplas... 28 7.7
At1g19220.1 68414.m02392 transcriptional factor B3 family protei... 28 7.7
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 28 7.7
>At4g11490.1 68417.m01847 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 636
Score = 29.9 bits (64), Expect = 1.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +2
Query: 242 HSWTHWKNGKEIENTEDYVEEVYDASQ 322
++W HW+NG +E + +E+ Y +++
Sbjct: 538 YAWRHWRNGSPLELVDSELEKNYQSNE 564
>At5g42120.1 68418.m05128 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 691
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 248 WTHWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 403
W+HW+ GK ++ + + E +DA + +G + + +V++ VR
Sbjct: 591 WSHWETGKVLDGADIMLREEFDAEEMERVLMVGMVCAHPDSEKRPRVKDAVR 642
>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
domain-containing protein contains Pfam PF00226: DnaJ
domain; similar to dnaJ (GI:144832) [Clostridium
acetobutylicum]
Length = 207
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 253 CPRVGPASTVRNLGSLYLINGKTAVR 176
CP G S + N+ S +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129
>At5g18660.1 68418.m02215 isoflavone reductase-related low
similarity to SP|P52575 Isoflavone reductase (EC
1.3.1.-) (IFR) {Medicago sativa}
Length = 417
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = -2
Query: 337 VLSVVLGRVVYFFNVVLSILDFL-----SVLPVCPRVGPASTVRNLGSLYLINGKTAVRP 173
+L +LGR F V + I+DF+ S+ + P VG A+ +G Y + P
Sbjct: 318 ILFKILGREPKFLKVPIEIMDFVIGVLDSIAKIFPSVGEAAEFGKIGRYYAAESMLILDP 377
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 242 HSWTHWKNGKEIENTEDYVEEVYDASQ 322
H+W W+NG +E + + E Y +S+
Sbjct: 824 HAWRLWRNGSPLELVDPTIGESYQSSE 850
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 245 SWTHWKNGKEIENTEDYVEEVYDAS 319
SW W+ ++I ++YV+ YD S
Sbjct: 992 SWKQWRRRRKIHRLQEYVKSQYDHS 1016
>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
identical to phage-type RNA polymerase rpoT2
[Arabidopsis thaliana] GI:11340683
Length = 1011
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 330 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 509
+K V+ TR+ ++ R DPE P + R R + QTV S TY
Sbjct: 740 EKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTY 799
Query: 510 *GRAETSRR 536
G + +R
Sbjct: 800 IGARDQIKR 808
>At4g34690.1 68417.m04924 hypothetical protein
Length = 207
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 594 SSFLP-CFFVSNTCSPHIWSLFYLFQLDLSKLSSW 493
+SFL CFF S TC +W L+ + D S W
Sbjct: 120 TSFLTWCFFGSLTCISFVWGLWNTSKTDRSLADLW 154
>At2g24120.2 68415.m02882 DNA-directed RNA polymerase, chloroplast
(RPOPT) identical to SP|O24600 DNA-directed RNA
polymerase, chloroplast precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 1035
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +3
Query: 330 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 509
+K V+ R+ + + + DPE++P + R + QTV S TY
Sbjct: 722 EKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTY 781
Query: 510 *GRAETSRR 536
G E +R
Sbjct: 782 VGAREQIKR 790
>At2g24120.1 68415.m02881 DNA-directed RNA polymerase, chloroplast
(RPOPT) identical to SP|O24600 DNA-directed RNA
polymerase, chloroplast precursor (EC 2.7.7.6)
{Arabidopsis thaliana}
Length = 993
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/69 (24%), Positives = 28/69 (40%)
Frame = +3
Query: 330 DKTV*VHMPTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTVTVSTRKTTY 509
+K V+ R+ + + + DPE++P + R + QTV S TY
Sbjct: 722 EKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTY 781
Query: 510 *GRAETSRR 536
G E +R
Sbjct: 782 VGAREQIKR 790
>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 1086
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 93 DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 239
D I I A NS PFT +P+ + V+PL KYN + V G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 242 HSWTHWKNGKEIENTEDYV-EEVYDASQ 322
H W W+NG+ IE + + EE YD +
Sbjct: 732 HIWDRWENGEAIEIIDKLMGEETYDEGE 759
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,788
Number of Sequences: 28952
Number of extensions: 329666
Number of successful extensions: 1113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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