Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30435
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    28   1.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   1.8  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    27   3.2  

>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 88  DISEFLCSHTYNIGSASMASYSLCHKHVTNDWKRNSDFFLIIGNRTINV 234
           D+S FL  HT+ IG A +         +  + +++ D  L+  +R ++V
Sbjct: 113 DVSTFLMKHTFEIGDAFLGYAGRFSPWLVAELQKHPDIALVEPDRVMHV 161


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 112 HTYNIGSASMASYSLCHKHVTNDWKRNSDF 201
           +T+N  S S + ++  HK +T+D K +  F
Sbjct: 78  NTFNESSTSFSPFTKAHKEITDDLKPDKSF 107


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = +1

Query: 115 TYNIGSASMASYSLCHKHVTNDWKRNSDFFLIIGNRTINVNDFRQMNSTIMTD 273
           T + G+  +  Y  CH    ++W +N +   +  +  + +++  QM ++  TD
Sbjct: 8   TVDCGNLILVPYQKCHVLKYHNWMKNEELQELTCSEPLTLDEEYQMQASWSTD 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,552
Number of Sequences: 5004
Number of extensions: 44786
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)