Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30435
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475...    28   7.7  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    28   7.7  

>08_02_0423 -
           16946435-16946542,16946924-16947045,16947442-16947504,
           16949707-16949844,16950062-16950170,16950610-16950934,
           16952482-16952645
          Length = 342

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 444 IRTRTTVR*HFLGCFSTKSFVRV*ELSNKPRCYLCVYV*TL 322
           +R +  V  +F   +    F R+ E    P CY C+ V TL
Sbjct: 28  LRWQPEVEEYFAAAYGRDRFARISEALAHPSCYSCIRVNTL 68


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  IDMSYELTYPNFSVHIH 118
           +DMS  +TYPN   H+H
Sbjct: 534 VDMSINVTYPNLKPHLH 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,043
Number of Sequences: 37544
Number of extensions: 238820
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)