Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30435
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ...    29   2.1  
At1g48290.1 68414.m05394 expressed protein ; expression supporte...    27   8.5  

>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain;
           low similarity to SP:Q96GR4 Zinc finger DHHC domain
           containing protein 12 (Zinc finger protein 400) {Homo
           sapiens}
          Length = 288

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 403 FLDQIFCSRLGVIEQAPML-SMCLCLNVI 320
           F+D+IFC +LG    APML S+ + L V+
Sbjct: 8   FVDKIFCGKLGETSYAPMLFSLIVILMVL 36


>At1g48290.1 68414.m05394 expressed protein ; expression supported
           by MPSS
          Length = 444

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 ASYSLCHKHVTNDWKRNS 195
           A +  C KH+ ++WKRNS
Sbjct: 176 AEHRQCAKHIMDNWKRNS 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,793
Number of Sequences: 28952
Number of extensions: 216599
Number of successful extensions: 340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)