Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30434
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 124 3e-29
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 124 3e-29
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.083
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 0.34
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 29 1.0
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 29 1.4
02_05_1037 + 33682048-33682188,33682317-33682358,33683143-336833... 29 1.8
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 2.4
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 28 2.4
04_04_0932 - 29488626-29488877,29488965-29489201,29489578-294899... 28 3.1
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 27 4.1
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 5.5
11_03_0180 - 11294527-11294823,11295847-11295852 27 7.2
09_02_0084 + 4106803-4106851,4108165-4108460 27 7.2
06_03_0493 + 21402536-21404599 27 7.2
06_03_0194 + 17775189-17775482,17775793-17775844,17775934-177759... 27 7.2
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 27 7.2
04_03_0183 + 12352147-12352179,12352390-12353349,12353815-123539... 27 7.2
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 26 9.5
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981... 26 9.5
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718 26 9.5
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 124 bits (299), Expect = 3e-29
Identities = 57/85 (67%), Positives = 66/85 (77%)
Frame = +1
Query: 10 HGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 189
H GLV GL EAAKA++K A LCVLAE+CD+ Y KLV+ALC EH + LV V + K LGE
Sbjct: 35 HDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGE 94
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSK 264
WAGLCKID +GKARK+VGCSCV K
Sbjct: 95 WAGLCKIDSEGKARKVVGCSCVVVK 119
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYLK 314
V+KDFGEE+ L++++DY+K
Sbjct: 117 VVKDFGEESEGLNIVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 124 bits (299), Expect = 3e-29
Identities = 57/85 (67%), Positives = 66/85 (77%)
Frame = +1
Query: 10 HGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 189
H GLV GL EAAKA++K A LCVLAE+CD+ Y KLV+ALC EH + LV V + K LGE
Sbjct: 35 HDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGE 94
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSK 264
WAGLCKID +GKARK+VGCSCV K
Sbjct: 95 WAGLCKIDSEGKARKVVGCSCVVVK 119
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/20 (50%), Positives = 18/20 (90%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYLK 314
V+KD+GEE+ L++++DY+K
Sbjct: 117 VVKDYGEESEGLNIVQDYVK 136
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.1 bits (72), Expect = 0.083
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 19 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 198
L G+ E K++ + Q LC++A N V LC E IP V V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLAT-AG 103
Query: 199 LCK 207
K
Sbjct: 104 TTK 106
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.1 bits (67), Expect = 0.34
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 19 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 198
L G+ E K++ + LCV+A N V LC E IP + V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLAT-AG 103
Query: 199 LCK 207
K
Sbjct: 104 TTK 106
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 25 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 186
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 130 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 25 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 186
+GL +++ +A L V+A + D + ALC + +IP V +LG
Sbjct: 115 YGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
>02_05_1037 +
33682048-33682188,33682317-33682358,33683143-33683328,
33684442-33684657,33684803-33684949,33685525-33685866,
33687257-33687361
Length = 392
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +1
Query: 124 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVSSKISARKLQRWMCSR 303
QA N ++ P VK D+N W + + K GK I SCV S R+ S
Sbjct: 137 QASINVYE-PKVKQDSNDLSASWIQIGSVPKVGKGVGIGAGSCVYPSFSGDSFARFHISW 195
Query: 304 TTSSRRAN 327
+ N
Sbjct: 196 DNEELKKN 203
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 85 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 186
A CDE +K + +CN + L + D+N +G
Sbjct: 316 AFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 154 VESDVRCTEPEQVSCMRLHHSSQPKHIVLLA 62
+ES ++ TEP + + LH +S+P +VL A
Sbjct: 268 IESSMQRTEPYKFPSLGLHSNSKPSSVVLSA 298
>04_04_0932 -
29488626-29488877,29488965-29489201,29489578-29489942,
29490825-29491137
Length = 388
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSKISARKLQR 288
W G + G +R +VGC S+KI A +L R
Sbjct: 156 WKGTLYLANLGDSRAVVGCLTGSNKIVAEQLTR 188
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 247 SSRQFS-LPCHPCQSCRD 197
SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.1 bits (57), Expect = 5.5
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 4 LIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKL 183
++ GG HG+HE +D R+ L + + A LV ALC +I L +V + +
Sbjct: 139 ILQGGFFHGIHELTYGVDIRKIRLMGVLQ---RIAIAYLVVALC---EIWLRRVSSGGNI 192
Query: 184 G 186
G
Sbjct: 193 G 193
>11_03_0180 - 11294527-11294823,11295847-11295852
Length = 100
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 109 MRLHHSSQPKHIVLLASCQEL*RLREDRAQ 20
+RLHH S I +LA C++ L+E+R +
Sbjct: 3 VRLHHWSDEDCIKILAQCKKAVPLQEERGK 32
>09_02_0084 + 4106803-4106851,4108165-4108460
Length = 114
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 1 ALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNN 174
A+ GL +A + DK Q L +N EAA K QAL + +K +N
Sbjct: 53 AIFQNGLGSSFDDAVELFDKLQCALDKYYKNIAEAATKWASQALAMTKTLNQLKFCSN 110
>06_03_0493 + 21402536-21404599
Length = 687
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 4 LIHGGLVHGLHEAAKALDKRQAVLCVLAEN---CDEAAYKKLVQALCNEHQIPLVK 162
L++ L+HG H K +K +L + D + Y L+Q LCN H++ K
Sbjct: 399 LLYTTLIHG-HFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAK 453
>06_03_0194 +
17775189-17775482,17775793-17775844,17775934-17775959,
17776525-17776869,17777231-17777287
Length = 257
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 62 GKQYYVFWLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLENGLVSARL 211
G +++ RT +KPH L+ ++ W+ + + E ARL
Sbjct: 92 GHLHFLHMERTKLKPHRCELYASLGPQLQMGWTNIQLCQVAERDAAIARL 141
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 40 AAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK 180
A L+ +A L VL E+C + V + C +H++ +V +D K
Sbjct: 570 AMDLLEFTKAELDVLREDCGWKEFLGKVTSFCVKHKVKVVDMDGKYK 616
>04_03_0183 +
12352147-12352179,12352390-12353349,12353815-12353998,
12354087-12354799
Length = 629
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 40 AAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK 180
A L+ +A L VL E+C + V + C +H++ +V +D K
Sbjct: 475 AMDLLEFTKAELDVLREDCGWKEFLGKVTSFCVKHKVKVVDMDGKYK 521
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 249 GAADNFPCLAILVNLAE 199
GA D F CLA+ +NL E
Sbjct: 590 GAEDPFQCLAVCINLTE 606
>04_04_0753 -
27797298-27797547,27797765-27797951,27798040-27798113,
27798719-27798949,27799047-27799133,27799244-27799434
Length = 339
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 13 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKK 117
GGL+ G+ AAKA++ +L + D++A K
Sbjct: 196 GGLISGVALAAKAINPSIRILAAEPKGADDSAQSK 230
>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
Length = 587
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 40 AAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK 180
A L+ +A L VL E+C + V + C +H++ +V +D K
Sbjct: 436 AMDLLEFTKAELDVLREDCGCKEFLGKVTSFCVKHKVKVVDMDGKYK 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,991
Number of Sequences: 37544
Number of extensions: 177431
Number of successful extensions: 619
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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