Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30434
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 119 6e-28
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 119 6e-28
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 119 6e-28
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 114 2e-26
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 114 2e-26
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.12
At1g51920.1 68414.m05853 expressed protein 31 0.37
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.49
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.49
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.65
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 30 0.65
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.1
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 28 2.0
At4g39450.1 68417.m05582 expressed protein 28 2.6
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 2.6
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 3.5
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 27 3.5
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 27 4.6
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 4.6
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c... 27 6.1
At5g01180.1 68418.m00022 proton-dependent oligopeptide transport... 26 8.0
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 119 bits (287), Expect = 6e-28
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +1
Query: 10 HGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 189
+GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSK 264
WAGLCKID +G ARK+VGCSC+ K
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYL 311
VIKDFGEET AL+++K +L
Sbjct: 123 VIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 119 bits (287), Expect = 6e-28
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +1
Query: 10 HGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 189
+GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSK 264
WAGLCKID +G ARK+VGCSC+ K
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYL 311
VIKDFGEET AL+++K +L
Sbjct: 123 VIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 119 bits (287), Expect = 6e-28
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +1
Query: 10 HGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 189
+GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC +H I L+ V + K LGE
Sbjct: 41 YGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGE 100
Query: 190 WAGLCKIDKDGKARKIVGCSCVSSK 264
WAGLCKID +G ARK+VGCSC+ K
Sbjct: 101 WAGLCKIDSEGNARKVVGCSCLVIK 125
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYL 311
VIKDFGEET AL+++K +L
Sbjct: 123 VIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 114 bits (275), Expect = 2e-26
Identities = 51/88 (57%), Positives = 67/88 (76%)
Frame = +1
Query: 1 ALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK 180
A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L+ V + K
Sbjct: 38 ARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKT 97
Query: 181 LGEWAGLCKIDKDGKARKIVGCSCVSSK 264
LGEWAGLCKID +G ARK+VGCSC+ K
Sbjct: 98 LGEWAGLCKIDSEGNARKVVGCSCLVVK 125
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYL 311
V+KDFGEET AL ++ ++
Sbjct: 123 VVKDFGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 114 bits (275), Expect = 2e-26
Identities = 51/88 (57%), Positives = 67/88 (76%)
Frame = +1
Query: 1 ALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK 180
A +GG+V GLHE AK ++KR A L VLAE+C++ Y KLV+ALC +H++ L+ V + K
Sbjct: 38 ARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKT 97
Query: 181 LGEWAGLCKIDKDGKARKIVGCSCVSSK 264
LGEWAGLCKID +G ARK+VGCSC+ K
Sbjct: 98 LGEWAGLCKIDSEGNARKVVGCSCLVVK 125
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 255 VIKDFGEETPALDVLKDYL 311
V+KDFGEET AL ++ ++
Sbjct: 123 VVKDFGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.12
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 19 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 198
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 199 LCK 207
K
Sbjct: 110 ATK 112
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -1
Query: 229 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 83
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 25 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 186
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.49
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 25 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 186
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 0.65
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 121 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 246
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 29.9 bits (64), Expect = 0.65
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 13 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEW 192
G L +GL + K + + + L E+ ++ +KK+ + P+++ NKK E
Sbjct: 1372 GSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQGNKKNAEE 1429
Query: 193 AGLCKIDKDGKARKIVG 243
KID+ GK ++I G
Sbjct: 1430 EMQDKIDRRGKNQEIKG 1446
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 52 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 141
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 314 LEVVLEHIQRWSFLAEIFDDTQEQ 243
+E VLE +W L EI ++TQE+
Sbjct: 378 VEEVLEEAPKWKVLREILEETQEE 401
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 208 IDKDGKARKIVG-CSCVSSKISARKLQRWMCSRTTSSRRA 324
ID KARK G S VS +I +W+C T++RRA
Sbjct: 1359 IDAGNKARKACGQASLVSLQIRMPD-SKWLCLSETNARRA 1397
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = -1
Query: 223 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 44
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 43 RLREDRAQDHHG 8
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 275 GNSSVGCAQGLPQVVELILRCNANPY 352
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +3
Query: 111 QETCSGSVQRTSDSTXXXXXXXKAWRMGWSLQD*QGWQGKENCRLLLCVIKDFGEETPAL 290
+E G + + DST R+ W + W+ + C + C++++ EET A+
Sbjct: 120 EEENVGGEESSDDSTRSLGKRPPPMRI-WMRRHQLQWKFRRLCNMNECLLQEIDEETEAV 178
Query: 291 DVLKDY 308
L Y
Sbjct: 179 PPLSMY 184
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -2
Query: 207 LAETSPFSKLFVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG 40
LA+T SK+FV V L W + F A L+ + I L +PL+++ G
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYG 126
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 83 WLRTVMKPHTRNLFRLCATNIRFHWSRL 166
WL + K H +F L T + + W+ L
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYLWNTL 354
>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
contains Pfam profiles: PF05033: Pre-SET motif, PF00856
SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
Length = 693
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 262 LMTHRSSRQFSLPCHPCQSCRDQPILQAFCCC 167
+MTH F CQ+CR QP + C C
Sbjct: 444 MMTHEF--HFDRQSLGCQNCRHQPCMHQNCTC 473
>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 570
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 88 ENCDEAAYKKLVQALCN--EHQIPLVKVDNNKKLGEWAGLC 204
E C+ AY + L N E Q+ + V +K + W+G C
Sbjct: 39 ECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTC 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,708,787
Number of Sequences: 28952
Number of extensions: 142845
Number of successful extensions: 493
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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