Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30433
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    43   4e-05
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom...    27   3.9  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   5.2  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   6.8  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 128 PLILVATLGTIVSIAFFNFAGISVTKEMSATTRMVLDSVRT 250
           P + V +   +VSIAFFN +G+++TK  SATTR +LD  RT
Sbjct: 240 PALYVISGVILVSIAFFNVSGLAITKLHSATTRSLLDIART 280



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 253 GVWVVSLAVRWQSFHWQHLMGFGVLIVGTCLYNNLV 360
           G+W++++A+  +SFH    +GF +LI G   Y++++
Sbjct: 282 GIWIIAMAMGMESFHLLQFLGFVLLIYGIFTYHSII 317


>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 115 LYQAIDSVFYGSPRVVVEVGRGRSPVEHDQQTGQHRET 2
           LY+ +DS      RV      GR+ ++  Q   Q RET
Sbjct: 127 LYELLDSFGVSRTRVAAIASTGRTVLQLSQMPSQERET 164


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +2

Query: 77  RGTIEDAIDGLIQIANNPLILVATLGTIVSIAFFNFAGISVTKEMSATTRMVLDSVRTLA 256
           +  I++A++GL ++ N P+ L   +G       +  AG +   ++    R  + S  +  
Sbjct: 417 KAAIDEAVEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPSPESFL 476

Query: 257 CG 262
            G
Sbjct: 477 SG 478


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 186 AKLKKAIDTIVPSVATRINGLLAICIRPSIASSMVPL-GLLSKW-GGAGVQ*NT 31
           +K++K +  IV  +A  I+   A C+ P+    +VPL   ++K+    G+Q NT
Sbjct: 103 SKVEKNVCVIVQLLAEMIDYGYATCMEPNALQDIVPLPSFMNKFMAVTGLQTNT 156


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 480 QFRFND*TLIYLSLCNVAVVIFDITQ*SHLE 572
           Q R+     +Y    N A+V++DITQ + LE
Sbjct: 74  QERYKSLAPMYYRNANCAIVVYDITQAASLE 104


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 271 LAVRWQSFHWQHLMGFGVLIVGTCL 345
           ++V +Q F W  ++GFG+LI    L
Sbjct: 350 ISVEFQFFFWFTIIGFGLLIFSIML 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,878
Number of Sequences: 5004
Number of extensions: 60424
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)