Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30433
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    29   4.1  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    29   4.1  
04_04_1389 + 33181459-33181593,33181666-33181847,33181958-331820...    29   4.1  
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957...    28   7.1  
04_04_1348 + 32807308-32807874                                         28   7.1  
05_07_0084 - 27587307-27589175                                         28   9.4  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    28   9.4  

>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  IDGLIQIANNPLILVATLGTIVSIAFFNFAGISVTKEMSATTRMVLDSVRTL 253
           IDG + + +  L  +   G ++   F NF+     KE+  T     DSV+ +
Sbjct: 176 IDGGMPLVSQHLTKIELSGIVLKDCFLNFSSCPALKELYFTKNCCFDSVKKI 227


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 22  SVGRVLLDSGPAPLRQQPEGNHRRRYRWPDTNRQQSIDPRG 144
           SVG  +    P   R  P        RW + N QQ +DP+G
Sbjct: 109 SVGSKIWKKRPRRSRDGPTSVAETIKRWAELNNQQELDPQG 149


>04_04_1389 +
           33181459-33181593,33181666-33181847,33181958-33182057,
           33182134-33182207,33182484-33182542,33182585-33182665,
           33182745-33182815,33183072-33183155,33183590-33183643
          Length = 279

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/64 (35%), Positives = 32/64 (50%)
 Frame = -2

Query: 234 STILVVADISLVTLMPAKLKKAIDTIVPSVATRINGLLAICIRPSIASSMVPLGLLSKWG 55
           S I  VAD S      ++ +  I T+  SV   + GL+ + IRP   S +VP G+  K  
Sbjct: 96  SGIAAVADAS-----SSQSRADILTLALSVTDILAGLVWLSIRPKSISPVVPRGVECKRV 150

Query: 54  GAGV 43
           G GV
Sbjct: 151 GTGV 154


>07_03_1427 +
           26495072-26495148,26495323-26495468,26495581-26495729,
           26495829-26496224
          Length = 255

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 202 GNADAGEIEESYRYNRTKRCHEDQWIVGDLYQAIDSVFYGS--PRVVVEVGRGRSPVEHD 29
           G+ D G   +S RY+R + CHE        + A+  +  G   P + ++   G+  + HD
Sbjct: 3   GHGDGGGQHDSQRYSRRRGCHETSAKAAQSFVAMPGLTIGDTVPNLELDSTHGKIRI-HD 61


>04_04_1348 + 32807308-32807874
          Length = 188

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = -2

Query: 354 IVVQTGADDENSEAHKVLPVEALPPDSQRHYPHARVLTESSTILVVADISLVTLMPAKLK 175
           +VV  G +DE+S A  ++P + L PD  +  P        ST  V AD +  T  P  ++
Sbjct: 91  VVVVQGREDESSSALVLVPSQQLQPDVDK-TPRRSRSKPKSTKEVAADAAAPT-TPKAMR 148

Query: 174 KAIDTIVPSVATRINGL 124
             +  I    A+ ++ +
Sbjct: 149 SPVLAIGGRAASTVHAV 165


>05_07_0084 - 27587307-27589175
          Length = 622

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -2

Query: 390 VVFGGCTAAGYEIVVQTGADDENSEAHKVLPVEALPPDSQRHYPHARVLTESSTILVVAD 211
           +VFGG  A  YE V Q G  +  S    +L  E         YP   +L + +  +   D
Sbjct: 245 IVFGGRRAFSYEFVPQPGMTNGQSIKFPLLR-ETTDDVENNLYPFVNLLPDGNLFVFAND 303

Query: 210 ISLV 199
            S+V
Sbjct: 304 RSVV 307


>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 223  GCSRHFLGNADAGEIEESYRYNRTKRCHE 137
            G  + + G A  G +++SYRY+   R HE
Sbjct: 1844 GTKQTWKGLAHGGTVDDSYRYDMDNRYHE 1872


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,876
Number of Sequences: 37544
Number of extensions: 408255
Number of successful extensions: 1283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)