Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30433
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 31 1.0
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 29 3.1
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 3.1
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 29 3.1
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33) 29 3.1
SB_31162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13) 29 3.1
SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16) 29 3.1
SB_17385| Best HMM Match : IU_nuc_hydro (HMM E-Value=2.1e-07) 28 7.2
SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3) 28 9.5
SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22) 28 9.5
SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_56214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 32.3 bits (70), Expect = 0.44
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = -2
Query: 594 PIYSMLKIQDDFIGLCQKLQLQHYTETDKSTFNH*I*IGIY*YERLDYLCVKVSLCFRVH 415
P+ + +K D G L T TD S FN I I Y RL LC K+SL +
Sbjct: 88 PVSTFVKYSDSLFGWL----LPAMTVTDDSIFND-IGIDALVYIRLIKLCFKISLVILPY 142
Query: 414 DIGYAVDVVVFGGCTAAGYEIVVQTGADDENSEA 313
I + + + GG +G + + + +++++A
Sbjct: 143 GIIVLLPLNLHGGLHLSGLDKLTMSNMHEKSTKA 176
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +1
Query: 19 RSVGRVLLDSGPAPLRQQPEGNHRRRYRWPDTNRQQSIDPRGNAWYDCIDSFLQFRR-HQ 195
RS L+SG L+++ E RR R + + +P + C Q R HQ
Sbjct: 157 RSECAAALNSGELELKREAE---ERRQRRKASEIRTGSNPSQTSVLVCRSCARQENREHQ 213
Query: 196 RYQGNVCYNQNGARLS 243
+Y NVC++Q+ AR S
Sbjct: 214 KYVWNVCFDQSLARYS 229
>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
Length = 1080
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 579 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 623
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 362 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 406
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 180 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 224
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 180 IDMLILDFSKAFDKVAHGRLISKLLYYGIRGRTLAWIKSWLTNRT 224
>SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)
Length = 363
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 120 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 164
>SB_31162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 58 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 102
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 180 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 224
>SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13)
Length = 269
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 44 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 88
>SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)
Length = 287
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 661 ISLYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
I + I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 44 IDMLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 88
>SB_17385| Best HMM Match : IU_nuc_hydro (HMM E-Value=2.1e-07)
Length = 233
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 89 EDAIDGLIQIANNPLILVATLGTIVSIAFFNFAGISVTKEMSATTRM 229
E A+D LI++AN+ + LVA LG + ++A + +K + T M
Sbjct: 7 EHAVDALIRLANDDVTLVA-LGPLTNLALASRLDPDFSKRLRKTVIM 52
>SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)
Length = 242
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 655 LYIAPFIKAFKLFIYRKLIVTYLFYVKNSR*LHWVMSKITTAT 527
+ I F KAF + +LI L+Y R L W+ S +T T
Sbjct: 1 MLILDFSKAFDKVAHGRLISKLLYYGIQGRTLAWIKSWLTNRT 43
>SB_57435| Best HMM Match : Ricin_B_lectin (HMM E-Value=1.4e-22)
Length = 472
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -1
Query: 199 NADAGEIEESYRYNRTKRCHEDQWIVGDLYQAIDSVFYGSPRVVVEVGRGRSPVE 35
N G+IEE R RC +W V ++Y + S + E+ +G V+
Sbjct: 306 NTPYGDIEERVELRRKLRCRPFKWYVQNVYPELKLPSDESTKSFGEIKQGNQCVD 360
>SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 371 RQRGTRLLYRQVPTMRTPKP 312
RQ G+RLL R VP TP P
Sbjct: 126 RQLGSRLLLRSVPKAETPPP 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,085,817
Number of Sequences: 59808
Number of extensions: 460540
Number of successful extensions: 1226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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