Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30433
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    97   9e-21
AC006674-9|AAF39935.1|  178|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z82274-6|CAB05225.2|  138|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF016686-2|AAB66239.2|  399|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 97.5 bits (232), Expect = 9e-21
 Identities = 48/84 (57%), Positives = 57/84 (67%)
 Frame = +2

Query: 2   GFSVLSGLLVVFYWTPAPPHFDNNPRGTIEDAIDGLIQIANNPLILVATLGTIVSIAFFN 181
           G   LS L++ FY+   P  F  NP G +ED      +I   P I +A  GT+VSIAFFN
Sbjct: 227 GMVTLSILMIPFYYIHVPRTFSTNPEGRLEDVFYAWKEITEEPTIALALSGTVVSIAFFN 286

Query: 182 FAGISVTKEMSATTRMVLDSVRTL 253
           FAG+SVTKE+SATTRMVLDSVRTL
Sbjct: 287 FAGVSVTKELSATTRMVLDSVRTL 310



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 256 VWVVSLAVRWQSFHWQHLMGFGVLIVGTCLYNNLV 360
           +WVVS+ +  + F    L GF +LI+GT +YN+++
Sbjct: 312 IWVVSIPLFHEKFIAIQLSGFAMLILGTLIYNDIL 346


>AC006674-9|AAF39935.1|  178|Caenorhabditis elegans Hypothetical
           protein K12H6.5 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -2

Query: 423 RVHDIGYAVDVVVFGGCTAAGYEIVVQTGADDENSEAHKVLPVEALPPDSQRHYPHARVL 244
           RV   GY  +++V  G               D ++++H  LP+      + RH+PH   +
Sbjct: 8   RVRSDGYNSEMIVTPGFPILSNG--EDNECQDNSNDSHCCLPINH---PTHRHHPHHPTM 62

Query: 243 TESSTILVV 217
           T S+TIL++
Sbjct: 63  TSSTTILLL 71


>Z82274-6|CAB05225.2|  138|Caenorhabditis elegans Hypothetical
           protein JC8.8 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 43  DSGPAPLRQQPEG--NHRRRYRWPDTNRQ-QSIDPRGNAWYDCIDSFLQFRRHQRYQGNV 213
           D GP P     EG  N+   +R   + R+  +IDP    ++DC D  +  +R  +++   
Sbjct: 47  DDGPDPDDVLDEGFTNNDGTFRLEGSERELTNIDPVFKVYHDCDDGIIPGQRKIKFRIPN 106

Query: 214 CYNQNGARLSEDSGVWVVSL 273
            Y   G R  +   + V++L
Sbjct: 107 KYISAGGRAQKTFEIGVLNL 126


>AF016686-2|AAB66239.2|  399|Caenorhabditis elegans Hypothetical
           protein R07C3.10 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 41  WTPAPPHFDNNPRGTIEDAIDGLIQIANNPLILVATLGTIVSIAF--FNFAGISVTK 205
           W+ A  H   +     E+A +G+ ++A + ++    +GTIVS  +  +NF  + + K
Sbjct: 289 WSGADAHPRVHYTKMSENAYNGVTRLATDWILNAPPIGTIVSFGYSAWNFCNLQIKK 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,331,402
Number of Sequences: 27780
Number of extensions: 342484
Number of successful extensions: 917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)